DaRUS

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This is the Data Repository of the University of Stuttgart.

SFB 1313 "Interface-Driven Multi-Field Processes in Porous Media"

SFB 1333 "Molecular heterogeneous catalysis in confined geometries"

Institute of Biochemistry

Institute of Applied Mechanics (MIB)

Institute of Thermodynamics and Thermal Process Engineering

Stuttgart Center for Simulation Science (SC SimTech)

Cluster of Excellence Integrative Computational Design and Construction for Architecture (EXC IntCDC)

SFB/Transregio 161 "Quantitative Methods for Visual Computing"

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125,741 to 125,750 of 125,909 Results

Expansins_NterminalDomain_9.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 50.5 KB - MD5: 84663760c0d987f0b92761ca71a83d6a Profile hidden Markov model in HMMER format for the N-terminal expansin domain
Expansins_NterminalDomain_9.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.8 KB - MD5: c82120b740d3867bc4b11a2fe5def375 Stockholm alignment for the N-terminal expansin domain
Query sequences for the update of the ExED Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/DARUS-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF] Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).
Update_1_Seed_sequences_Hfams_1-25.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 8.7 KB - MD5: 4f5de838715758c51a8cf33de96da0e8 Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.
Update_2_Centroids_USEARCH.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 6.5 KB - MD5: 5ae0036abf33f3585e5629a8337b7039 Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.
Update_2_Centroids_USEARCH.tab Jan 30, 2020 - Query sequences for the update of the ExED Tabular Data - 505 B - 1 Variables, 25 Observations - UNF:6:eFcDsa8udm3F11lB7M2q6w== Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.
Benchmark C1.2 - Numerical results reference solution Jan 28, 2020 - RootWaterUptake Koch, Timo, 2020, "Benchmark C1.2 - Numerical results reference solution", https://doi.org/10.18419/DARUS-471, DaRUS, V1 Root water uptake simulation with a numerical scheme where the root-soil surface is explicitly resolved by the computational grid. The roots are a one-dimensional network grid embedded in a 3D soil domain. This dataset contains the grid files for root and soil. 8-day-old lupine, segmented from MRI measurements (courtesy of Magdalena Landl, FZ Jülic...
c12b_3d_plot.tar.gz Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution Gzip Archive - 21.2 MB - MD5: b0288e79fbbad832076c55e5b7e12a44 DataVisualisation Archive with data to reproduce a 3d render of the water saturation results from the paper
c12_psi_root_depth_plot.tar.gz Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution Gzip Archive - 111.2 KB - MD5: c28705d4d482d29a8a1d007892ce45e2 DataVisualisation Archive with data and Python script to reproduce a plot of the root water potential over depth
c12_psi_soil_depth_plot.tar.gz Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution Gzip Archive - 40.1 MB - MD5: 5624f0677d7e9dcfada031c8106ab4e5 DataVisualisation Archive with data and Python script to reproduce a plot of the soil water potential over depth

Expansins_NterminalDomain_9.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 50.5 KB -

Profile hidden Markov model in HMMER format for the N-terminal expansin domain

Expansins_NterminalDomain_9.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.8 KB -

Stockholm alignment for the N-terminal expansin domain

Query sequences for the update of the ExED

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/DARUS-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]

Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).

Update_1_Seed_sequences_Hfams_1-25.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 8.7 KB -

Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.

Update_2_Centroids_USEARCH.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 6.5 KB -

Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.

Update_2_Centroids_USEARCH.tab

Jan 30, 2020 - Query sequences for the update of the ExED

Tabular Data - 505 B - 1 Variables, 25 Observations -

Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.

Benchmark C1.2 - Numerical results reference solution

Jan 28, 2020 - RootWaterUptake

Koch, Timo, 2020, "Benchmark C1.2 - Numerical results reference solution", https://doi.org/10.18419/DARUS-471, DaRUS, V1

Root water uptake simulation with a numerical scheme where the root-soil surface is explicitly resolved by the computational grid. The roots are a one-dimensional network grid embedded in a 3D soil domain. This dataset contains the grid files for root and soil. 8-day-old lupine, segmented from MRI measurements (courtesy of Magdalena Landl, FZ Jülic...

c12b_3d_plot.tar.gz

Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution

Gzip Archive - 21.2 MB -

DataVisualisation

Archive with data to reproduce a 3d render of the water saturation results from the paper

c12_psi_root_depth_plot.tar.gz

Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution

Gzip Archive - 111.2 KB -

DataVisualisation

Archive with data and Python script to reproduce a plot of the root water potential over depth

c12_psi_soil_depth_plot.tar.gz

Jan 28, 2020 - Benchmark C1.2 - Numerical results reference solution

Gzip Archive - 40.1 MB -

DataVisualisation

Archive with data and Python script to reproduce a plot of the soil water potential over depth

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