DaRUS

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This is the Data Repository of the University of Stuttgart.

SFB 1313 "Interface-Driven Multi-Field Processes in Porous Media"

SFB 1333 "Molecular heterogeneous catalysis in confined geometries"

Institute of Biochemistry

Institute of Applied Mechanics (MIB)

Institute of Thermodynamics and Thermal Process Engineering

Stuttgart Center for Simulation Science (SC SimTech)

Cluster of Excellence Integrative Computational Design and Construction for Architecture (EXC IntCDC)

SFB/Transregio 161 "Quantitative Methods for Visual Computing"

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125,651 to 125,660 of 126,237 Results

Reference_alignment_CHITs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 18.2 KB - MD5: 116056d1f562c17e3a2b0ebe8714d0fe Stockholm alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_ELYSs.aln Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7 Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.stockholm Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3 Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Seed sequences for the Glycoside Hydrolase 19 Engineering Database Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/DARUS-804, DaRUS, V1 Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).
Seed_sequences.fasta Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database Unknown - 20.3 KB - MD5: 1961bf93199d823fa0fb953e5e120100 FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.
GraphML files for protein sequence networks of glycoside hydrolase 19 homologues Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "GraphML files for protein sequence networks of glycoside hydrolase 19 homologues", https://doi.org/10.18419/DARUS-802, DaRUS, V1 GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of 90% sequence identity to derive representative sequences. Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein seque...
CHITs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 14.3 MB - MD5: a314980fa659092d23cfda60fb45929a Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
ELYSs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 5.6 MB - MD5: f255b9e12d219a65533643ae3b529282 Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
GH19_40_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 72.1 MB - MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75 Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
Runtime performance measurements of interactive visualisation algorithms May 28, 2020 - SFB-TRR 161 A02 "Quantifying Visual Computing Systems" Bruder, Valentin; Müller, Christoph; Frey, Steffen; Ertl, Thomas, 2020, "Runtime performance measurements of interactive visualisation algorithms", https://doi.org/10.18419/DARUS-810, DaRUS, V1 Runtime performance measurements for GPU-based direct volume rendering and GPU-based raycasting of spherical particles on ten different discrete graphics processing units from AMD and NVIDIA. The data set at hand systematically evaluates typical factors influencing performance of interactive visualisations like view-port size, data set size, camera...

Reference_alignment_CHITs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 18.2 KB -

Stockholm alignment for the profile hidden Markov model of the chitinase superfamily

Reference_alignment_ELYSs.aln

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 394.5 KB -

Clustal alignment for the profile hidden Markov model of the endolysin superfamily

Reference_alignment_ELYSs.stockholm

Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Unknown - 419.3 KB -

Stockholm alignment for the profile hidden Markov model of the endolysin superfamily

Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/DARUS-804, DaRUS, V1

Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).

Seed_sequences.fasta

Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Unknown - 20.3 KB -

FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.

GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "GraphML files for protein sequence networks of glycoside hydrolase 19 homologues", https://doi.org/10.18419/DARUS-802, DaRUS, V1

GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of 90% sequence identity to derive representative sequences. Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein seque...

CHITs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 14.3 MB -

Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

ELYSs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 5.6 MB -

Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

GH19_40_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 72.1 MB -

Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).

Runtime performance measurements of interactive visualisation algorithms

May 28, 2020 - SFB-TRR 161 A02 "Quantifying Visual Computing Systems"

Bruder, Valentin; Müller, Christoph; Frey, Steffen; Ertl, Thomas, 2020, "Runtime performance measurements of interactive visualisation algorithms", https://doi.org/10.18419/DARUS-810, DaRUS, V1

Runtime performance measurements for GPU-based direct volume rendering and GPU-based raycasting of spherical particles on ten different discrete graphics processing units from AMD and NVIDIA. The data set at hand systematically evaluates typical factors influencing performance of interactive visualisations like view-port size, data set size, camera...

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