DaRUS

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This is the Data Repository of the University of Stuttgart.

SFB 1313 "Interface-Driven Multi-Field Processes in Porous Media"

SFB 1333 "Molecular heterogeneous catalysis in confined geometries"

Institute of Biochemistry

Institute of Applied Mechanics (MIB)

Institute of Thermodynamics and Thermal Process Engineering

Stuttgart Center for Simulation Science (SC SimTech)

Cluster of Excellence Integrative Computational Design and Construction for Architecture (EXC IntCDC)

SFB/Transregio 161 "Quantitative Methods for Visual Computing"

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126,521 to 126,530 of 126,753 Results

hemimethylated Repeat 2.txt Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation Plain Text - 17.6 MB - MD5: 5a481ba428f48c1afa51e5e707391a58 Data
hemimethylated without enzyme.txt Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation Plain Text - 18.5 MB - MD5: e0d3d3f8b1db1ec19e7e00bd55140672 Data
readme_random_flank_substrate.pdf Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation Adobe PDF - 436.1 KB - MD5: e854c1b0fe3d2d266f58f7538c6fb741 Documentation Additional information
unmethylated with enzyme.txt Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation Plain Text - 21.9 MB - MD5: 5f204000cefbfd71e59deef2357daba1 Data
unmethylated without enzyme.txt Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation Plain Text - 17.5 MB - MD5: 8bf6eb4956113e9ad601001f28052d65 Data
CBM63sequences.tab Jan 30, 2020 - Expansin domains in CBM63 sequences Tabular Data - 8.1 KB - 1 Variables, 510 Observations - UNF:6:9nlqS8HIWJ5ngSIjGG58OQ== Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 35.
GraphML files for protein sequence networks of expansin homologues Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/DARUS-624, DaRUS, V1 GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein sequence networks were g...
CBM63_Sfams123_210-300_90_50.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 70.6 MB - MD5: 51c315706ee9f262b816ee2654172d0e Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by...
GH45_Sfam_1234_Ndomain_90_30.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 178.7 MB - MD5: afaa6dd751225c3dfb4a7702ad979993 Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by at least 30% pairwise sequence identity (edge...
Ndomains_1234_CBM_09_60identity.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 25.2 MB - MD5: dd85b921f70e99ae9cbffc2156be55c0 Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch a...

hemimethylated Repeat 2.txt

Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Plain Text - 17.6 MB -

Data

hemimethylated without enzyme.txt

Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Plain Text - 18.5 MB -

Data

readme_random_flank_substrate.pdf

Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Adobe PDF - 436.1 KB -

Documentation

Additional information

unmethylated with enzyme.txt

Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Plain Text - 21.9 MB -

Data

unmethylated without enzyme.txt

Jan 30, 2020 - Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Plain Text - 17.5 MB -

Data

CBM63sequences.tab

Jan 30, 2020 - Expansin domains in CBM63 sequences

Tabular Data - 8.1 KB - 1 Variables, 510 Observations -

Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 35.

GraphML files for protein sequence networks of expansin homologues

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/DARUS-624, DaRUS, V1

GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein sequence networks were g...

CBM63_Sfams123_210-300_90_50.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 70.6 MB -

Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by...

GH45_Sfam_1234_Ndomain_90_30.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 178.7 MB -

Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by at least 30% pairwise sequence identity (edge...

Ndomains_1234_CBM_09_60identity.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 25.2 MB -

Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch a...

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