1 to 10 of 28 Results
Höpfl, Sebastian, 2024, "Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a", https://doi.org/10.18419/darus-3838, DaRUS, V1, UNF:6:az4wbAbWWcIbbLxQh/QPXA== [fileUNF]
This dataset contains the proposed sphingolipid rheostat model with mass-action kinetics and a proposed negative feedback from ceramide to its synthesis from Sphinganine. The model is written in the Systems Biology Markup Language (SBML) and with the experimental data, experiment... |
Apr 8, 2024 - Mathematical modeling and simulation of cellular systems
Höpfl, Sebastian, 2024, "Bayesian Modeling of Time Series Data (BayModTS)", https://doi.org/10.18419/darus-3876, DaRUS, V1
BayModTS is a FAIR workflow for processing highly variable and sparse data. The code and results of the examples in the BayModTS paper are stored in this repository. A maintained version of BayModTS that can be applied to your personal applications can be found on Git Hub. |
Mar 28, 2024 - MD Simulations
Jeltsch, Albert; Schnee, Philipp; Pleiss, Jürgen; Weirich, Sara, 2024, "Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate", https://doi.org/10.18419/darus-3815, DaRUS, V1
This data collection contains additional data related to Weirich et al.: "Discovery of new NSD2 non-histone substrates and design of a super-substrate". This includes Modelled structures of NSD2 bound to different peptides Source data of the results of the MD analysis MD simulati... |
Mar 19, 2024 - Institute for Stochastics and Applications
Höpfl, Sebastian, 2024, "Percentile Intervals in Bayesian Inference are Overconfident", https://doi.org/10.18419/darus-4068, DaRUS, V1
This dataset demonstrates the difference in calculating percentile Intervals as approximation for Highest Density Intervals (HDI) vs. Highest Posterior Density (HPD). This is demonstrated with extended partial liver resection data (ZeLeR-study, ethical vote: 2018-1246-Material).... |
Jan 16, 2024 - Institute for Modelling and Simulation of Biomechanical Systems
Nadler, Tobias; Wolfen, Simon; Häufle, Daniel F. B.; Schmitt, Syn, 2024, "Technical specifications and details of the muscle-driven biorobotic arm ATARO", https://doi.org/10.18419/darus-3813, DaRUS, V1
ATARO is a bio-inspired arm robot with two degrees of freedom. Five artificial muscle-spring units (MSUs) are used for actuation. The MSUs, each consisting of a pneumatic artificial muscle (PAM) and a spring in series, mimic the characteristics of the human muscle-tendon complex.... |
Jan 9, 2024 - Institute of Biochemistry and Technical Biochemistry
Häussler, Max, 2024, "Data for: 'EnzymeML-based modeling workflow: from raw data to kinetic parameters'", https://doi.org/10.18419/darus-3867, DaRUS, V1
Kinetic parameter estimates for small laccase (SLAC) catalyzed oxidation of ABTS, investigated across the temperature range between 25 °C and 45°C. This dataset contains the following files: Unprocessed absorption data from the respective enzyme assays (.txt) Derived calibration... |
Dec 15, 2023 - PN 2-3B
Santana Chacon, Pablo Filipe; Hammer, Maria; Wochner, Isabell; Walter, Johannes R.; Schmitt, Syn, 2023, "Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers", https://doi.org/10.18419/darus-3796, DaRUS, V1
This code/data allows you reproduce the results of the paper: "A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers" by P. F. S. Chacon, M. Hammer, I. Wochner, J. R. Walter and S. Schmitt. Always cite the... |
Nov 28, 2023 - Neutral Body Posture
Lerge, Patrick; Nölle, Lennart Vincent; Schmitt, Syn, 2023, "Replication Data for: "Deep learning-based estimation of the neutral body posture considering three-dimensional local joint angles"", https://doi.org/10.18419/darus-3793, DaRUS, V1
This dataset contains the pose estimation results from the third-party framework "PARE" (Max Planck Institute for Intelligent Systems) and the pose averaging script (Matlab, Mathworks, Natick, MA) to obtain the joint angle results described in the paper "Deep learning-based estim... |
Nölle, Lennart; Lerge, Patrick; Martynenko, Oleksandr; Wochner, Isabell; Kempter, Fabian; Kleinbach, Christian; Schmitt, Syn; Fehr, Jörg, 2022, "EHTM Code and Manual", https://doi.org/10.18419/darus-1144, DaRUS, V2
This Dataset contains the implementation of the four element Extended Hill-type Muscle (EHTM) model with serial damping and eccentric force–velocity relation including Ca2+ dependent activation dynamics and internal methods for physiological muscle control for the finite-element... |
Aug 4, 2023 - Walking Model
Bunz, Elsa; Häufle, Daniel F. B.; Remy, C. David; Schmitt, Syn, 2023, "Experimental results for Bioinspired Preactivation Reflex Increases Robustness of Walking on Rough Terrain", https://doi.org/10.18419/darus-3492, DaRUS, V1
This dataset contains the experimental results and postprocessing script (Matlab, Mathworks, Natick, MA) to obtain the plots and results described in the paper "Bioinspired Preactivation Reflex Increases Robustness of Walking on Rough Terrain" by Elsa K. Bunz, Daniel F.B. Haeufle... |
