PN 2

SimTech EXC 2075 Project Network 2 "In silico models of coupled biological systems"

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1 to 10 of 193 Results

ABTS_Measurement.omex Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase Plain Text - 7.8 KB - MD5: 63e5dea9ce74e53c79186ed4999cfef5
allmin.tgz Oct 6, 2022 - allmin: A Reduced Human All-Body Model Compressed Archive - 38.7 MB - MD5: d7fc8aea20200bc424854bee02d999d6 Contains all files for the model, including the technical description and a readme file how to use/run the model.
AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 48.9 KB - MD5: f35f461622c4204a4e279458bccd14ce Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.
AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 55.2 KB - MD5: 12615450c9a703b35f21a3e9af6f2a4f Used to model the given OMEX EnzymeML archive using the Python package lmfit.
AnalysingTimeCourseDataUsingMichaelisMenten.ipynb Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit Jupyter Notebook - 164.0 KB - MD5: 9c8c06214cdad3b844fe75bed36dcbe1 Jupyter notebook that was used to model the OMEX archive found in this dataset.
analytic_model.R Mar 14, 2024 - Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference R Syntax - 12.2 KB - MD5: 5a5b05bfd7f5325a59640df493b1b879
arm26.tgz Oct 6, 2022 - arm26: A Human Arm Model Compressed Archive - 16.6 MB - MD5: fe30c7f2688fe1072cacef772ed7c760 Contains all files for the model, including the technical description and a readme file how to use/run the model.
CarboligationOfPyruvateCatalysedByHcAHAS_C_unit_Malzacher.omex Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit Plain Text - 3.8 KB - MD5: d18217f667b4c14a4c3b1f0c0e20f148 Resulting OMEX file that was generated from the EnzymeML spreadsheet found in this dataset.
CollectingDataByBioCatHubAndVisualisation.ipynb Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase Jupyter Notebook - 20.9 KB - MD5: bc9c3f0840a676ccdc6b8804a5aaf583 Jupyter Notebook that was used to model the given OMEX EnzymeML archive
DeactivationOfGlucoseOxidase_Host.omex Feb 15, 2022 - Deactivation of Glucose Oxidase Plain Text - 10.5 KB - MD5: 7961fc2b94cc8cef2ae4d143021394e0

ABTS_Measurement.omex

Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase

Plain Text - 7.8 KB -

allmin.tgz

Oct 6, 2022 - allmin: A Reduced Human All-Body Model

Compressed Archive - 38.7 MB -

Contains all files for the model, including the technical description and a readme file how to use/run the model.

AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 48.9 KB -

Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.

AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 55.2 KB -

Used to model the given OMEX EnzymeML archive using the Python package lmfit.

AnalysingTimeCourseDataUsingMichaelisMenten.ipynb

Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit

Jupyter Notebook - 164.0 KB -

Jupyter notebook that was used to model the OMEX archive found in this dataset.

analytic_model.R

Mar 14, 2024 - Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference

R Syntax - 12.2 KB -

arm26.tgz

Oct 6, 2022 - arm26: A Human Arm Model

Compressed Archive - 16.6 MB -

Contains all files for the model, including the technical description and a readme file how to use/run the model.

CarboligationOfPyruvateCatalysedByHcAHAS_C_unit_Malzacher.omex

Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit

Plain Text - 3.8 KB -

Resulting OMEX file that was generated from the EnzymeML spreadsheet found in this dataset.

CollectingDataByBioCatHubAndVisualisation.ipynb

Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase

Jupyter Notebook - 20.9 KB -

Jupyter Notebook that was used to model the given OMEX EnzymeML archive

DeactivationOfGlucoseOxidase_Host.omex

Feb 15, 2022 - Deactivation of Glucose Oxidase

Plain Text - 10.5 KB -

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