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File Type: Tabular Data

1 to 10 of 15 Results

Templates.tab Dec 1, 2021 - Profile hidden Markov model for PETase homologues Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw== Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
GH19ED.tab May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
CBM63_expansin_domains_score20.tab Jun 16, 2020 - Expansin domains in CBM63 sequences Tabular Data - 8.4 KB - 1 Variables, 567 Observations - UNF:6:i7aLIL6weIF8nhTjUBKf+g== Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20.
Conserved_amino_acids_in_C-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA== Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...
Conserved_amino_acids_in_N-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA== Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...
Taxonomic_analysis.tab Apr 9, 2020 - Occurrence of expansins in the tree of life Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA== Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains ex...
CBM63sequences.tab Jan 30, 2020 - Expansin domains in CBM63 sequences Tabular Data - 8.1 KB - 1 Variables, 510 Observations - UNF:6:9nlqS8HIWJ5ngSIjGG58OQ== Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 35.
Update_2_Centroids_USEARCH.tab Jan 30, 2020 - Query sequences for the update of the ExED Tabular Data - 505 B - 1 Variables, 25 Observations - UNF:6:eFcDsa8udm3F11lB7M2q6w== Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.
seeds_accession.tab Jan 27, 2020 - Query sequences for the update of the LccED Tabular Data - 25.8 KB - 1 Variables, 1260 Observations - UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).
APAP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 11.9 KB - 9 Variables, 173 Observations - UNF:6:UT/tuDCkMGlPeUykEk1hsw== APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv

Templates.tab

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Tabular Data - 255 B - 3 Variables, 12 Observations -

Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE

GH19ED.tab

May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

Tabular Data - 5.0 MB - 9 Variables, 22461 Observations -

CBM63_expansin_domains_score20.tab

Jun 16, 2020 - Expansin domains in CBM63 sequences

Tabular Data - 8.4 KB - 1 Variables, 567 Observations -

Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20.

Conserved_amino_acids_in_C-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 7.3 KB - 8 Variables, 85 Observations -

Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...

Conserved_amino_acids_in_N-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 9.8 KB - 8 Variables, 123 Observations -

Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...

Taxonomic_analysis.tab

Apr 9, 2020 - Occurrence of expansins in the tree of life

Tabular Data - 4.0 KB - 6 Variables, 90 Observations -

Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains ex...

CBM63sequences.tab

Jan 30, 2020 - Expansin domains in CBM63 sequences

Tabular Data - 8.1 KB - 1 Variables, 510 Observations -

Update_2_Centroids_USEARCH.tab

Jan 30, 2020 - Query sequences for the update of the ExED

Tabular Data - 505 B - 1 Variables, 25 Observations -

Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.

seeds_accession.tab

Jan 27, 2020 - Query sequences for the update of the LccED

Tabular Data - 25.8 KB - 1 Variables, 1260 Observations -

Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).

APAP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 11.9 KB - 9 Variables, 173 Observations -

APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv

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