Dataset Persistent ID
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doi:10.18419/darus-735 |
Publication Date
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2020-04-09 |
Title
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Conserved positions in expansin homologues
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Author
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Lohoff, Caroline (Universität Stuttgart)
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Contact
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Use email button above to contact.
Pleiss, Jürgen (Universität Stuttgart)
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Description
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Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence entries). The expansin domains were annotated using hmmscan (from the HMMER software suite) against all sequence entries in the Expansin Engineering Database.
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Subject
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Medicine, Health and Life Sciences
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Keyword
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conservation analysis
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Related Publication
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Lohoff C, Buchholz PCF, Le Roes-Hill M, Pleiss J (2020) The Expansin Engineering Database: a navigation and classification tool for expansins and homologues (submitted)
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Language
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English
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Depositor
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Buchholz, Patrick
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Deposit Date
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2020-03-10
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Related Datasets
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Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED",
doi:10.18419/darus-623, DaRUS
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Data Sources
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Expansin Engineering Database (
https://exed.biocatnet.de/); PDB (
doi: 10.2210/pdb4FER/pdb); Georgelis N, Tabuchi A, Nikolaidis N, Cosgrove DJ. Structure-function analysis of the bacterial expansin EXLX1. J Biol Chem. 2011;286:16814-16823.
doi:10.1074/jbc.M111.225037; Yennawar NH, Li AC, Dudzinski DM, Tabuchi A, Cosgrove DJ. Crystal structure and activities of EXPB1 (Zea m 1), a β-expansin and group-1 pollen allergen from maize. Proc Natl Acad Sci U S A. 2006;103:14664-14671.
doi:10.1073/pnas.0605979103
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