Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

Version 1.0
Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]
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Description
The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Protein Data Bank (PDB) and the taxonomic lineage for each sequence entry in the GH19ED.
Subject Medicine, Health and Life Sciences
Keyword protein sequence, protein structure, taxonomy, lineage, source organism, amino acid sequence
Related Publication Orlando M., Buchholz P. C. F., Lotti M. & Pleiss J. (2020). The GH19 Engineering Database: an extended classification system for exploring the properties of sequence space and protein evolution. (submitted)
Notes The tab-separated tabular file comprises nine columns:
(1) the sequence identifier from the GH19ED, integer (Sequence_id),
(2) the protein sequence accessions from the NCBI, semicolon-separated (NCBI_accessions),
(3) the PDB accessions, semicolon-separated (PDB_accessions),
(4) the name of the source or source organism (Source_name),
(5) the NCBI taxonomy identifier for the source (NCBI_taxonomy_id),
(6) the taxonomic lineage from the lowest to the highest rank, as inferred from NCBI taxonomy (Lineage),
(7) the "protein" identifier from the GH19ED, integer (Protein_id),
(8) the "homologous family" (or group) identifier from the GH19ED, integer (Homologous_family_id),
(9) the "superfamily" (or subfamily) identifier from the GH19ED, integer (Superfamily_id). For sequence entries assigned to more than one source organism name, only the first taxonomic lineage found in the GH19ED is listed.
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CC BY 4.0

1 File
GH19ED.tab
Tabular Data - 5.0 MB
Published May 20, 2021
63 Downloads
9 Variables, 22461 Observations UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
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