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Subject: Chemistry Subject: Medicine, Health and Life Sciences Publication Year: 2022

1 to 10 of 11 Results

QSDB - a graphical Quorum Sensing Database: VANTED add-on source code Nov 21, 2022 - SFB-TRR 161 D04 "Quantitative Aspects of Immersive Analytics for the Life Sciences" Klein, Karsten; Garkov, Dimitar; Rütschlin, Sina; Böttcher, Thomas; Schreiber, Falk, 2022, "QSDB - a graphical Quorum Sensing Database: VANTED add-on source code", https://doi.org/10.18419/darus-3242, DaRUS, V1 The add-on had been designed for the VANTED framework and used to create QSDB Database's collection of clickable networks. Each network is laid out according to SBGN standards, showing quorum sensing and quorum quenching interactions between organisms and signaling molecules. Thi...
NGS data related to Dukatz et al.: DNA methyltransferase DNMT3A forms interaction networks with the CpG site and flanking sequence elements for efficient methylation Sep 27, 2022 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Dukatz, Michael; Adam, Sabrina, 2022, "NGS data related to Dukatz et al.: DNA methyltransferase DNMT3A forms interaction networks with the CpG site and flanking sequence elements for efficient methylation", https://doi.org/10.18419/darus-2993, DaRUS, V1 The naming of the files is described in the Supplemental Tables 1 of the accompanying manuscript.
Data for: Correlation of mitochondrial TOM core complex stop-and-go and open-closed channel dynamics May 18, 2022 - Biophysics Group Wang, Shuo; Findeisen, Lukas; Leptihn, Sebastian; Wallace, Mark Ian; Hörning, Marcel; Nussberger, Stephan, 2022, "Data for: Correlation of mitochondrial TOM core complex stop-and-go and open-closed channel dynamics", https://doi.org/10.18419/darus-2158, DaRUS, V1, UNF:6:9dvSdn6uEaqFUk/rRvtwoA== [fileUNF] The role of lateral diffusion of proteins in the membrane in the context of function has not been examined extensively. The data set addresses the relationship between protein lateral diffusion and channel activity of the general protein import pore of mitochondria (TOM-CC). Opti...
Catalysis of L-cysteine by IscS in the presence of IscU Feb 15, 2022 - EnzymeML at work Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/darus-2483, DaRUS, V1 Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calcu...
Carboligation of Pyruvate catalysed by HcAHAS C Unit Feb 15, 2022 - EnzymeML at work Malzacher, Stephan, 2022, "Carboligation of Pyruvate catalysed by HcAHAS C Unit", https://doi.org/10.18419/darus-2470, DaRUS, V1 The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate. The measurements were conducted for six different pH values (in the range from pH 5 to pH8). For each of...
Deactivation of Glucose Oxidase Feb 15, 2022 - EnzymeML at work Høst, Amalie Vang, 2022, "Deactivation of Glucose Oxidase", https://doi.org/10.18419/darus-2469, DaRUS, V1 The data is unpublished and contains absorption data over time, together with the calculated initial rates. Reaction conditions and the experimental setup are described in the additional Method section. Measured was the deactivation of Glucose Oxidase over time. The enzyme activi...
Synthesis and Hydrolysis of Cephalexin Feb 15, 2022 - EnzymeML at work Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/darus-2468, DaRUS, V1 Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl...
Oxidation of ABTS by Trametes versicolor laccase Feb 15, 2022 - EnzymeML at work Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/darus-2467, DaRUS, V1 Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.
Propioin Synthesis using Benzoin Aldolase Feb 15, 2022 - EnzymeML at work Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/darus-2466, DaRUS, V1 Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all ca...
EnzymeML at work(Universität Stuttgart) Feb 7, 2022EnzymeML Supplementary datasets for the publication "EnzymeML at work".

QSDB - a graphical Quorum Sensing Database: VANTED add-on source code

Nov 21, 2022 - SFB-TRR 161 D04 "Quantitative Aspects of Immersive Analytics for the Life Sciences"

Klein, Karsten; Garkov, Dimitar; Rütschlin, Sina; Böttcher, Thomas; Schreiber, Falk, 2022, "QSDB - a graphical Quorum Sensing Database: VANTED add-on source code", https://doi.org/10.18419/darus-3242, DaRUS, V1

The add-on had been designed for the VANTED framework and used to create QSDB Database's collection of clickable networks. Each network is laid out according to SBGN standards, showing quorum sensing and quorum quenching interactions between organisms and signaling molecules. Thi...

NGS data related to Dukatz et al.: DNA methyltransferase DNMT3A forms interaction networks with the CpG site and flanking sequence elements for efficient methylation

Sep 27, 2022 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Dukatz, Michael; Adam, Sabrina, 2022, "NGS data related to Dukatz et al.: DNA methyltransferase DNMT3A forms interaction networks with the CpG site and flanking sequence elements for efficient methylation", https://doi.org/10.18419/darus-2993, DaRUS, V1

The naming of the files is described in the Supplemental Tables 1 of the accompanying manuscript.

Data for: Correlation of mitochondrial TOM core complex stop-and-go and open-closed channel dynamics

May 18, 2022 - Biophysics Group

Wang, Shuo; Findeisen, Lukas; Leptihn, Sebastian; Wallace, Mark Ian; Hörning, Marcel; Nussberger, Stephan, 2022, "Data for: Correlation of mitochondrial TOM core complex stop-and-go and open-closed channel dynamics", https://doi.org/10.18419/darus-2158, DaRUS, V1, UNF:6:9dvSdn6uEaqFUk/rRvtwoA== [fileUNF]

The role of lateral diffusion of proteins in the membrane in the context of function has not been examined extensively. The data set addresses the relationship between protein lateral diffusion and channel activity of the general protein import pore of mitochondria (TOM-CC). Opti...

Catalysis of L-cysteine by IscS in the presence of IscU