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Deposit Date: 2020 Subject: Medicine, Health and Life Sciences

1 to 10 of 21 Results

EHTM Code and Manual Oct 9, 2023 - Extended Hill-Type Muscle Material Model (EHTM) Nölle, Lennart; Lerge, Patrick; Martynenko, Oleksandr; Wochner, Isabell; Kempter, Fabian; Kleinbach, Christian; Schmitt, Syn; Fehr, Jörg, 2022, "EHTM Code and Manual", https://doi.org/10.18419/darus-1144, DaRUS, V2 This Dataset contains the implementation of the four element Extended Hill-type Muscle (EHTM) model with serial damping and eccentric force–velocity relation including Ca2+ dependent activation dynamics and internal methods for physiological muscle control for the finite-element...
Neck muscle data for Falling Heads: investigating reflexive responses to head-neck perturbations Apr 1, 2022 - Falling Heads Wochner, Isabell; Schmitt, Syn, 2022, "Neck muscle data for Falling Heads: investigating reflexive responses to head-neck perturbations", https://doi.org/10.18419/darus-1145, DaRUS, V1, UNF:6:x9+WHb9RUaJfQ9jJiNEQJw== [fileUNF] This dataset contains the neck muscle parameters for the user-defined Extended Hill Type Muscle Material as used in the publication paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko...
Trajectory Data for Falling Heads: investigating reflexive responses to head-neck perturbations Apr 1, 2022 - Falling Heads Wochner, Isabell, 2022, "Trajectory Data for Falling Heads: investigating reflexive responses to head-neck perturbations", https://doi.org/10.18419/darus-1132, DaRUS, V1, UNF:6:qCoJktHRm+8r61oAjbw9+w== [fileUNF] This dataset contains the extracted trajectories from the video data for 17 participants of the Falling Head experiment of the paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko and S...
EMG data for Falling Heads: investigating reflexive responses in active Human Body Models Apr 1, 2022 - Falling Heads Wochner, Isabell; Schmitt, Syn, 2022, "EMG data for Falling Heads: investigating reflexive responses in active Human Body Models", https://doi.org/10.18419/darus-1038, DaRUS, V1, UNF:6:qCoJktHRm+8r61oAjbw9+w== [fileUNF] This dataset contains the raw electromyographic (EMG) data for 17 participants of the Falling Head experiment of the paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko and Syn Schmitt...
Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 May 20, 2021 - Glycoside Hydrolase 19 Engineering Database Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF] The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...
GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases May 3, 2021 - Bioinformatics Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/darus-817, DaRUS, V1 Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.
Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase. Sep 1, 2020 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Dukatz, Michael; Adam, Sabrina, 2020, "Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.", https://doi.org/10.18419/darus-815, DaRUS, V3 Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3B. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K for 2 hours. Afterwards, the DNA w...
Expansin domains in CBM63 sequences Jun 16, 2020 - Expansin Engineering Database Lohoff, Caroline, 2020, "Expansin domains in CBM63 sequences", https://doi.org/10.18419/darus-625, DaRUS, V2, UNF:6:p+wfgXpfeyT0/kJm49wLTA== [fileUNF] The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were annotated with the hmmscan command from the HMMER software package. The hits were filtered by a minimal doma...
Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1 A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s...
Seed sequences for the Glycoside Hydrolase 19 Engineering Database Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1 Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).

EHTM Code and Manual

Oct 9, 2023 - Extended Hill-Type Muscle Material Model (EHTM)

Nölle, Lennart; Lerge, Patrick; Martynenko, Oleksandr; Wochner, Isabell; Kempter, Fabian; Kleinbach, Christian; Schmitt, Syn; Fehr, Jörg, 2022, "EHTM Code and Manual", https://doi.org/10.18419/darus-1144, DaRUS, V2

This Dataset contains the implementation of the four element Extended Hill-type Muscle (EHTM) model with serial damping and eccentric force–velocity relation including Ca2+ dependent activation dynamics and internal methods for physiological muscle control for the finite-element...

Neck muscle data for Falling Heads: investigating reflexive responses to head-neck perturbations

Apr 1, 2022 - Falling Heads

Wochner, Isabell; Schmitt, Syn, 2022, "Neck muscle data for Falling Heads: investigating reflexive responses to head-neck perturbations", https://doi.org/10.18419/darus-1145, DaRUS, V1, UNF:6:x9+WHb9RUaJfQ9jJiNEQJw== [fileUNF]

This dataset contains the neck muscle parameters for the user-defined Extended Hill Type Muscle Material as used in the publication paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko...

Trajectory Data for Falling Heads: investigating reflexive responses to head-neck perturbations

Apr 1, 2022 - Falling Heads

Wochner, Isabell, 2022, "Trajectory Data for Falling Heads: investigating reflexive responses to head-neck perturbations", https://doi.org/10.18419/darus-1132, DaRUS, V1, UNF:6:qCoJktHRm+8r61oAjbw9+w== [fileUNF]

This dataset contains the extracted trajectories from the video data for 17 participants of the Falling Head experiment of the paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko and S...

EMG data for Falling Heads: investigating reflexive responses in active Human Body Models

Apr 1, 2022 - Falling Heads

Wochner, Isabell; Schmitt, Syn, 2022, "EMG data for Falling Heads: investigating reflexive responses in active Human Body Models", https://doi.org/10.18419/darus-1038, DaRUS, V1, UNF:6:qCoJktHRm+8r61oAjbw9+w== [fileUNF]

This dataset contains the raw electromyographic (EMG) data for 17 participants of the Falling Head experiment of the paper "’Falling Heads’: investigating reflexive responses to head-neck perturbations" by Isabell Wochner, Lennart V. Nölle, Oleksandr V. Martynenko and Syn Schmitt...

Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

May 20, 2021 - Glycoside Hydrolase 19 Engineering Database

Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]

The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...

GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases

May 3, 2021 - Bioinformatics

Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/darus-817, DaRUS, V1

Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.

Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.

Sep 1, 2020 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Dukatz, Michael; Adam, Sabrina, 2020, "Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.", https://doi.org/10.18419/darus-815, DaRUS, V3

Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3B. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K for 2 hours. Afterwards, the DNA w...

Expansin domains in CBM63 sequences

Jun 16, 2020 - Expansin Engineering Database

Lohoff, Caroline, 2020, "Expansin domains in CBM63 sequences", https://doi.org/10.18419/darus-625, DaRUS, V2, UNF:6:p+wfgXpfeyT0/kJm49wLTA== [fileUNF]

The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were annotated with the hmmscan command from the HMMER software package. The hits were filtered by a minimal doma...

Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1

A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s...

Seed sequences for the Glycoside Hydrolase 19 Engineering Database

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1

Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).

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