PN 2-6

Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.

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151 to 160 of 187 Results

exp_visc_glyc.xml Oct 28, 2022 - Viscosities of experimental aqueous glycerol mixtures XML - 102.7 KB - MD5: a4108b374f9a54edc6396a2efc2691a2
Densities of simulated aqueous glycerol mixtures Oct 28, 2022 - FAIR Fluids Gültig, Matthias; Range, Jan Peter; Schmitz, Benjamin; Pleiss, Jürgen, 2022, "Densities of simulated aqueous glycerol mixtures", https://doi.org/10.18419/DARUS-3113, DaRUS, V1 In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the standard data exchange format ThermoML. The practicability of integrating thermophysical data from experiment and simulation was demonstrated for two binary mixtures, methanol...
sim_dens_glyc.xml Oct 28, 2022 - Densities of simulated aqueous glycerol mixtures XML - 32.9 KB - MD5: c87b7b19bcb5f9c3c7259f3fdde8a727
Data for: FAIR and scalable management of small-angle X-ray scattering data Jun 9, 2022 - SFB 1333 A4 - Bruckner group Giess, Torsten; Itzigehl, Selina; Range, Jan Peter; Bruckner, Johanna R.; Pleiss, Jürgen, 2022, "Data for: FAIR and scalable management of small-angle X-ray scattering data", https://doi.org/10.18419/DARUS-2842, DaRUS, V1 This dataset contains small-angle X-ray scattering (SAXS) measurements on various octyltrimethylammonium bromide (OTAB)/water and octyltrimethylammonium chloride (OTAC)/water mixtures at different mass fractions and temperatures, as well as analysis and visualization data thereof. The data and metadata are contained within an archive adhering to th...
fairsaxs_220512.zip Jun 9, 2022 - Data for: FAIR and scalable management of small-angle X-ray scattering data ZIP Archive - 19.1 MB - MD5: b8450cff6b02da9cf7fe60041bc97f1d
Catalysis of L-cysteine by IscS in the presence of IscU Feb 15, 2022 - EnzymeML at work Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1 Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.
AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 48.9 KB - MD5: f35f461622c4204a4e279458bccd14ce Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.
AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 55.2 KB - MD5: 12615450c9a703b35f21a3e9af6f2a4f Used to model the given OMEX EnzymeML archive using the Python package lmfit.
Desulfuration_Cysteine_Pinto_input_interferENZY.txt Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Plain Text - 370 B - MD5: 679c41f97de6f72684385e95865cb715 Text file that is used as input for InterferEnzy
Desulfuration_Cysteine_Pinto.omex Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Unknown - 6.5 KB - MD5: ef8907a79459d27a988be27c5a245a4c OMEX EnzymeML archive that was generated from the data using the given spreadsheet.

exp_visc_glyc.xml

Oct 28, 2022 - Viscosities of experimental aqueous glycerol mixtures

XML - 102.7 KB -

Densities of simulated aqueous glycerol mixtures

Oct 28, 2022 - FAIR Fluids

Gültig, Matthias; Range, Jan Peter; Schmitz, Benjamin; Pleiss, Jürgen, 2022, "Densities of simulated aqueous glycerol mixtures", https://doi.org/10.18419/DARUS-3113, DaRUS, V1

In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the standard data exchange format ThermoML. The practicability of integrating thermophysical data from experiment and simulation was demonstrated for two binary mixtures, methanol...

sim_dens_glyc.xml

Oct 28, 2022 - Densities of simulated aqueous glycerol mixtures

XML - 32.9 KB -

Data for: FAIR and scalable management of small-angle X-ray scattering data

Jun 9, 2022 - SFB 1333 A4 - Bruckner group

Giess, Torsten; Itzigehl, Selina; Range, Jan Peter; Bruckner, Johanna R.; Pleiss, Jürgen, 2022, "Data for: FAIR and scalable management of small-angle X-ray scattering data", https://doi.org/10.18419/DARUS-2842, DaRUS, V1

This dataset contains small-angle X-ray scattering (SAXS) measurements on various octyltrimethylammonium bromide (OTAB)/water and octyltrimethylammonium chloride (OTAC)/water mixtures at different mass fractions and temperatures, as well as analysis and visualization data thereof. The data and metadata are contained within an archive adhering to th...

fairsaxs_220512.zip

Jun 9, 2022 - Data for: FAIR and scalable management of small-angle X-ray scattering data

ZIP Archive - 19.1 MB -

Catalysis of L-cysteine by IscS in the presence of IscU

Feb 15, 2022 - EnzymeML at work

Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1

Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.

AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 48.9 KB -

Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.

AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 55.2 KB -

Used to model the given OMEX EnzymeML archive using the Python package lmfit.

Desulfuration_Cysteine_Pinto_input_interferENZY.txt

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Plain Text - 370 B -

Text file that is used as input for InterferEnzy

Desulfuration_Cysteine_Pinto.omex

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Unknown - 6.5 KB -

OMEX EnzymeML archive that was generated from the data using the given spreadsheet.

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