Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.
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1 to 10 of 31 Results
EnzymeML at work(Universität Stuttgart)
Feb 7, 2022EnzymeML
Supplementary datasets for the publication "EnzymeML at work".
Propioin Synthesis using Benzoin Aldolase
Feb 15, 2022 - EnzymeML at work
Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/darus-2466, DaRUS, V1
Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all ca...
CollectingDataByBioCatHubAndVisualisation.ipynb
Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase
Jupyter Notebook - 20.9 KB - MD5: bc9c3f0840a676ccdc6b8804a5aaf583
Jupyter Notebook that was used to model the given OMEX EnzymeML archive
PropioinSynthesis_Spoering.omex
Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase
Plain Text - 3.3 KB - MD5: 344913d82c8cf442d7332088fcfcbf4b
Oxidation of ABTS by Trametes versicolor laccase
Feb 15, 2022 - EnzymeML at work
Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/darus-2467, DaRUS, V1
Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.
ABTS_Measurement.omex
Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase
Plain Text - 7.8 KB - MD5: 63e5dea9ce74e53c79186ed4999cfef5
InsightIntoMechanismByModelling.ipynb
Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase
Jupyter Notebook - 339.6 KB - MD5: d90e44f2274a452074895e7fb6217e9f
Jupyter Notebook used to model the data given in the OMEX EnzymeML archive
Synthesis and Hydrolysis of Cephalexin
Feb 15, 2022 - EnzymeML at work
Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/darus-2468, DaRUS, V1
Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl...
EnzymeML_Lagerman.omex
Feb 15, 2022 - Synthesis and Hydrolysis of Cephalexin
Plain Text - 5.9 KB - MD5: 6d77930a7448abb093a9d772af571261
Deactivation of Glucose Oxidase
Feb 15, 2022 - EnzymeML at work
Høst, Amalie Vang, 2022, "Deactivation of Glucose Oxidase", https://doi.org/10.18419/darus-2469, DaRUS, V1
The data is unpublished and contains absorption data over time, together with the calculated initial rates. Reaction conditions and the experimental setup are described in the additional Method section. Measured was the deactivation of Glucose Oxidase over time. The enzyme activi...
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