PN 2

SimTech EXC 2075 Project Network 2 "In silico models of coupled biological systems"

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1 to 10 of 21 Results

Synthesis and Hydrolysis of Cephalexin Feb 15, 2022 - EnzymeML at work Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/darus-2468, DaRUS, V1 Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl...
Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers Dec 15, 2023 - PN 2-3B Santana Chacon, Pablo Filipe; Hammer, Maria; Wochner, Isabell; Walter, Johannes R.; Schmitt, Syn, 2023, "Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers", https://doi.org/10.18419/darus-3796, DaRUS, V1 This code/data allows you reproduce the results of the paper: "A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers" by P. F. S. Chacon, M. Hammer, I. Wochner, J. R. Walter and S. Schmitt. Always cite the...
Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference Mar 14, 2024 - PN 2-7 Reiser, Philipp; Aguilar, Javier Enrique; Guthke, Anneli; Bürkner, Paul-Christian, 2024, "Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference", https://doi.org/10.18419/darus-4093, DaRUS, V1 This code allows to replicate key experiments from our paper: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference. For further details, please refer to the README.md.
Propioin Synthesis using Benzoin Aldolase Feb 15, 2022 - EnzymeML at work Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/darus-2466, DaRUS, V1 Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all ca...
PN2-A-X ADIRES(Universität Stuttgart) Aug 7, 2023
PN 2-7(Universität Stuttgart) Mar 13, 2024 SimTech Project PN 2-7 "Data-integrated training of surrogate models for uncertainty quantification and diagnostics of complex biological systems models"
PN 2-6(Universität Stuttgart) Apr 19, 2022 Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.
PN 2-3B(Universität Stuttgart) Nov 9, 2023 Open-Source structurally physiological Hill-type model of the muscle spindle for forward-dynamic simulations in biophysics and biomechanics.
Oxidation of ABTS by Trametes versicolor laccase Feb 15, 2022 - EnzymeML at work Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/darus-2467, DaRUS, V1 Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.
Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM Jun 21, 2023 - Neck Reflex Behavior in Driving Simulator Experiments Kempter, Fabian; Lantella, Lorena; Stutzig, Norman; Fehr, Jörg; Siebert, Tobias, 2023, "Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM", https://doi.org/10.18419/darus-3000, DaRUS, V1 Neck movement and injury during a car crash is influenced by reflexes, strength, and flexibility. This data set contains in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. This data set includes...

Synthesis and Hydrolysis of Cephalexin

Feb 15, 2022 - EnzymeML at work

Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/darus-2468, DaRUS, V1

Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl...

Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers

Dec 15, 2023 - PN 2-3B

Santana Chacon, Pablo Filipe; Hammer, Maria; Wochner, Isabell; Walter, Johannes R.; Schmitt, Syn, 2023, "Replication Data for: A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers", https://doi.org/10.18419/darus-3796, DaRUS, V1

This code/data allows you reproduce the results of the paper: "A physiologically enhanced muscle spindle model: using a Hill-type model for extrafusal fibers as template for intrafusal fibers" by P. F. S. Chacon, M. Hammer, I. Wochner, J. R. Walter and S. Schmitt. Always cite the...

Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference

Mar 14, 2024 - PN 2-7

Reiser, Philipp; Aguilar, Javier Enrique; Guthke, Anneli; Bürkner, Paul-Christian, 2024, "Replication Code for: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference", https://doi.org/10.18419/darus-4093, DaRUS, V1

This code allows to replicate key experiments from our paper: Uncertainty Quantification and Propagation in Surrogate-based Bayesian Inference. For further details, please refer to the README.md.

Propioin Synthesis using Benzoin Aldolase

Feb 15, 2022 - EnzymeML at work

Spöring, Jan-Dirk, 2022, "Propioin Synthesis using Benzoin Aldolase", https://doi.org/10.18419/darus-2466, DaRUS, V1

Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The reaction was performed in triplicate, with 200 mM as the starting concentration of the propanal in all ca...

PN2-A-X ADIRES(Universität Stuttgart)

Aug 7, 2023

PN 2-7(Universität Stuttgart)

Mar 13, 2024

SimTech Project PN 2-7 "Data-integrated training of surrogate models for uncertainty quantification and diagnostics of complex biological systems models"

PN 2-6(Universität Stuttgart)

Apr 19, 2022

Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.

PN 2-3B(Universität Stuttgart)

Nov 9, 2023

Open-Source structurally physiological Hill-type model of the muscle spindle for forward-dynamic simulations in biophysics and biomechanics.

Oxidation of ABTS by Trametes versicolor laccase

Feb 15, 2022 - EnzymeML at work

Ngubane, Sandile, 2022, "Oxidation of ABTS by Trametes versicolor laccase", https://doi.org/10.18419/darus-2467, DaRUS, V1

Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different initial concentrations. All measurements were repeated for three replicates.

Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM

Jun 21, 2023 - Neck Reflex Behavior in Driving Simulator Experiments

Kempter, Fabian; Lantella, Lorena; Stutzig, Norman; Fehr, Jörg; Siebert, Tobias, 2023, "Neck Reflex Behavior in Driving Simulator Experiments - Academic-Scale Simulator at ITM", https://doi.org/10.18419/darus-3000, DaRUS, V1

Neck movement and injury during a car crash is influenced by reflexes, strength, and flexibility. This data set contains in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. This data set includes...

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