PN 2

SimTech EXC 2075 Project Network 2 "In silico models of coupled biological systems"

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21 to 30 of 34 Results

Densities of simulated aqueous glycerol mixtures Oct 28, 2022 - FAIR Fluids Gültig, Matthias; Range, Jan Peter; Schmitz, Benjamin; Pleiss, Jürgen, 2022, "Densities of simulated aqueous glycerol mixtures", https://doi.org/10.18419/DARUS-3113, DaRUS, V1 In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the standard data exchange format ThermoML. The practicability of integrating thermophysical data from experiment and simulation was demonstrated for two binary mixtures, methanol...
arm26: A Human Arm Model Oct 6, 2022 - demoa Wochner, Isabell; Schmitt, Syn, 2022, "arm26: A Human Arm Model", https://doi.org/10.18419/DARUS-2871, DaRUS, V2 An arm model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This arm26 model consists of a musculoskeletal model of the arm with two degrees of freedom actuated by six muscles. The model is prepared to run muscle-driven simulation using a simple biological motor con...
Neck Reflex Behavior in Driving Simulator Experiments(Universität Stuttgart) Jun 27, 2022 Neck movement and injury risks during a car crash are influenced by reflexes, strength, and flexibility. Data sets are provided containing in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. Torso, head and neck kinematics are measured using infrared reflective mar...
Data for: FAIR and scalable management of small-angle X-ray scattering data Jun 9, 2022 - SFB 1333 A4 - Bruckner group Giess, Torsten; Itzigehl, Selina; Range, Jan Peter; Bruckner, Johanna R.; Pleiss, Jürgen, 2022, "Data for: FAIR and scalable management of small-angle X-ray scattering data", https://doi.org/10.18419/DARUS-2842, DaRUS, V1 This dataset contains small-angle X-ray scattering (SAXS) measurements on various octyltrimethylammonium bromide (OTAB)/water and octyltrimethylammonium chloride (OTAC)/water mixtures at different mass fractions and temperatures, as well as analysis and visualization data thereof. The data and metadata are contained within an archive adhering to th...
demoa(Universität Stuttgart) Apr 28, 2022 A biophysics simulator for muscle-driven motion
PN 2-6(Universität Stuttgart) Apr 19, 2022 Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.
Catalysis of L-cysteine by IscS in the presence of IscU Feb 15, 2022 - EnzymeML at work Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1 Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.
Carboligation of Pyruvate catalysed by HcAHAS C Unit Feb 15, 2022 - EnzymeML at work Malzacher, Stephan, 2022, "Carboligation of Pyruvate catalysed by HcAHAS C Unit", https://doi.org/10.18419/DARUS-2470, DaRUS, V1 The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate. The measurements were conducted for six different pH values (in the range from pH 5 to pH8). For each of these measurements, a different Spreadsheet was created.
Deactivation of Glucose Oxidase Feb 15, 2022 - EnzymeML at work Høst, Amalie Vang, 2022, "Deactivation of Glucose Oxidase", https://doi.org/10.18419/DARUS-2469, DaRUS, V1 The data is unpublished and contains absorption data over time, together with the calculated initial rates. Reaction conditions and the experimental setup are described in the additional Method section. Measured was the deactivation of Glucose Oxidase over time. The enzyme activity is tested in a colorimetric assay, measuring the change of absorban...
Synthesis and Hydrolysis of Cephalexin Feb 15, 2022 - EnzymeML at work Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/DARUS-2468, DaRUS, V1 Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl ester. For each of the reactants, 9 data points are given over a time...

Densities of simulated aqueous glycerol mixtures

Oct 28, 2022 - FAIR Fluids

Gültig, Matthias; Range, Jan Peter; Schmitz, Benjamin; Pleiss, Jürgen, 2022, "Densities of simulated aqueous glycerol mixtures", https://doi.org/10.18419/DARUS-3113, DaRUS, V1

In order to make thermophysical properties of complex liquid mixtures available to a comprehensive analysis, we developed a data management and analysis platform based on the standard data exchange format ThermoML. The practicability of integrating thermophysical data from experiment and simulation was demonstrated for two binary mixtures, methanol...

arm26: A Human Arm Model

Oct 6, 2022 - demoa

Wochner, Isabell; Schmitt, Syn, 2022, "arm26: A Human Arm Model", https://doi.org/10.18419/DARUS-2871, DaRUS, V2

An arm model parametrised using generic literature data for the geometry of the skeleton including attachment points for ligaments and muscles. This arm26 model consists of a musculoskeletal model of the arm with two degrees of freedom actuated by six muscles. The model is prepared to run muscle-driven simulation using a simple biological motor con...

Neck Reflex Behavior in Driving Simulator Experiments(Universität Stuttgart)

Jun 27, 2022

Neck movement and injury risks during a car crash are influenced by reflexes, strength, and flexibility. Data sets are provided containing in-vivo measurements of neck kinematics and reflexes as participants are rapidly accelerated while driving a mechanically simulated car. Torso, head and neck kinematics are measured using infrared reflective mar...

Data for: FAIR and scalable management of small-angle X-ray scattering data

Jun 9, 2022 - SFB 1333 A4 - Bruckner group

Giess, Torsten; Itzigehl, Selina; Range, Jan Peter; Bruckner, Johanna R.; Pleiss, Jürgen, 2022, "Data for: FAIR and scalable management of small-angle X-ray scattering data", https://doi.org/10.18419/DARUS-2842, DaRUS, V1

This dataset contains small-angle X-ray scattering (SAXS) measurements on various octyltrimethylammonium bromide (OTAB)/water and octyltrimethylammonium chloride (OTAC)/water mixtures at different mass fractions and temperatures, as well as analysis and visualization data thereof. The data and metadata are contained within an archive adhering to th...

demoa(Universität Stuttgart)

Apr 28, 2022

A biophysics simulator for muscle-driven motion

PN 2-6(Universität Stuttgart)

Apr 19, 2022

Software-driven RDM (sdRDM), a generic and extensible bottom-up research data management concept and its application in biocatalysis and beyond.

Catalysis of L-cysteine by IscS in the presence of IscU

Feb 15, 2022 - EnzymeML at work

Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1

Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.

Carboligation of Pyruvate catalysed by HcAHAS C Unit

Feb 15, 2022 - EnzymeML at work

Malzacher, Stephan, 2022, "Carboligation of Pyruvate catalysed by HcAHAS C Unit", https://doi.org/10.18419/DARUS-2470, DaRUS, V1

The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate. The measurements were conducted for six different pH values (in the range from pH 5 to pH8). For each of these measurements, a different Spreadsheet was created.

Deactivation of Glucose Oxidase

Feb 15, 2022 - EnzymeML at work

Høst, Amalie Vang, 2022, "Deactivation of Glucose Oxidase", https://doi.org/10.18419/DARUS-2469, DaRUS, V1

The data is unpublished and contains absorption data over time, together with the calculated initial rates. Reaction conditions and the experimental setup are described in the additional Method section. Measured was the deactivation of Glucose Oxidase over time. The enzyme activity is tested in a colorimetric assay, measuring the change of absorban...

Synthesis and Hydrolysis of Cephalexin

Feb 15, 2022 - EnzymeML at work

Lagerman, Colton, 2022, "Synthesis and Hydrolysis of Cephalexin", https://doi.org/10.18419/DARUS-2468, DaRUS, V1

Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants over time were measured, for four different initial concentrations of cephalexin and phenylglycine methyl ester. For each of the reactants, 9 data points are given over a time...

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