1 to 10 of 17 Results
Mar 17, 2022
Molecular dynamics input script, raw data, and video of thin water film at the NaCl surface. |
Jan 14, 2021 - lee18b_supplement
Lee, Miru, 2021, "Simulation Scripts for Motile Bacteria in a Channel", https://doi.org/10.18419/darus-1188, DaRUS, V1
Simulation scripts to simulate bacteria in a channel. Motility patterns run and tumble or straight swimming are supported. Requires Espresso simulation package. (http://espressomd.org/) For more information, see README.MD |
Apr 11, 2024
Dataverse collecting the simulation input scripts around the theoretical studies of the ANR funded project "Transport of Water In Soft confinemenT (TWIST)" |
Aug 7, 2023
Lohrmann, Christoph; Holm, Christian, 2023, "Replication Data for: Lohrmann, Holm: Optimal motility strategies for self-propelled agents to explore porous media", https://doi.org/10.18419/darus-3608, DaRUS, V1
Code, Data and additional Material for "Optimal motility strategies for self-propelled agents to explore porous media". For details, see README.md |
Aug 15, 2023
Lohrmann, Christoph; Holm, Christian, 2023, "Replication Data for: Lohrmann, Holm: A novel model for biofilm initiation in porous media flow", https://doi.org/10.18419/darus-3680, DaRUS, V1
Code and Data for "A novel model for biofilm initiation in porous media flow". For details, see README.md |
Dec 11, 2023
Lohrmann, Christoph; Holm, Christian, 2023, "Replication Data for: Lohrmann, Holm, Datta: Influence of bacterial motility and hydrodynamics on phage bacteria encounters", https://doi.org/10.18419/darus-3836, DaRUS, V1
Code and Data for "Influence of bacterial motility and hydrodynamics on phage bacteria encounters". For details, see README.md |
Apr 23, 2024 - Simulation input scripts to study Transport of Water In Soft confinemenT (TWIST)
Schlaich, Alexander, 2024, "Replication Data for: Bridging Microscopic Dynamics and Hydraulic Permeability in Mechanically-Deformed Nanoporous Materials", https://doi.org/10.18419/darus-3966, DaRUS, V1
Simulation input scripts used for "Bridging Microscopic Dynamics and Hydraulic Permeability in Mechanically-Deformed Nanoporous Materials" The folders the corresponding simulation and analysis files to setup the simulation systems (SETUP), perform the GCMC/MD simulations (ISOTHER... |
Mar 3, 2023
Molecular dynamics input scripts. |
Oct 1, 2023
Molecular dynamics input scripts for GROMACS, and data analysis scripts in Python. |
Mar 25, 2022 - Thin Film Water on NaCl(100)
Gravelle, Simon, 2022, "Movies of thin film water on rough NaCl surface", https://doi.org/10.18419/darus-2770, DaRUS, V1
Videos showing water molecules at a rough sodium chloride solid surface for different roughness and different water chemical potential. The force field for the water is TIP4P/epsilon (https://doi.org/10.1021/jp410865y), and the force field for the ions is from Loche et al. (https... |