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2,381 to 2,390 of 2,425 Results
MAIN_single_sequence.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 11.1 KB - MD5: bc04e1cdbba168abbe21bf08e3773152
Main script to run the translational model (single sequence)
MAIN_single_sequence_plus_reference_transcriptome.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 11.3 KB - MD5: 932ac887c300fd96c010c53014f66a28
Main script to run the translational model (single sequence + reference transcriptome)
make_rate_struct_pl.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 448 B - MD5: bcf922dc4d328ee9a3127768cb66d6e4
Helper script to MAIN scripts.
MATLAB_DEPENDENCY_REPORT.xlsx
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MS Excel Spreadsheet - 12.0 KB - MD5: ccac6c7205ad84dd570580df8d6c17b3
Metabolites.dat
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
Fixed Field Text Data - 1.9 KB - MD5: 3fbf358a46fe445075c188916b3ee4ea
MOD_met_kinetics.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 3.4 KB - MD5: 0716bad7ec7ac8ec5019a99f899f2ef5
Stores kinetic information/parameters.
MOD_met_rhs.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 8.0 KB - MD5: ad69d096fb91125b41cd3a5d58127ec7
Containes differential (algebraic) equation system.
MOD_seq_kinetics.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 2.3 KB - MD5: 9de92fe7d598757f090f9811a2295865
Stores kinetic information/parameters. Is replicated for each sequence simulated.
MOD_seq_rhs.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 7.4 KB - MD5: def1f474f8baa107019fc1d55393f254
Containes differential (algebraic) equation system. Is replicated for each sequence simulated.
N_generation_pl.m
Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences
MATLAB Source Code - 949 B - MD5: d5c836e7752bc6903b521c971f29755c
Helper script to MAIN scripts.
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