Modelling

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2,361 to 2,370 of 2,408 Results

Hybrid_energy_octamers_library.mat Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Data - 194.2 KB - MD5: 928c4f38a3fca6245641e8a5e0ab1fde
IF_balance.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 1.7 KB - MD5: 634e1e507cd0a7a74101344f797a3eed Helper script to MAIN scripts.
main_config_eco_single_sequence.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 808 B - MD5: 82559fa740b10bed4d83667fce5a0460 Configuration script for to set target sequence and specify hybridization file if necessary; is called by 'MAIN_single_sequence.m'
main_config_eco_single_sequence_plus_reference_transcriptome.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 577 B - MD5: 7b80aab19ad5f0a8d287cd570308e972 Configuration script for to set target sequence plus reference transcriptome sequences; is called by 'MAIN_single_sequence_plus_reference_transcriptome.m'
MAIN_single_sequence.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 11.1 KB - MD5: bc04e1cdbba168abbe21bf08e3773152 Main script to run the translational model (single sequence)
MAIN_single_sequence_plus_reference_transcriptome.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 11.3 KB - MD5: 932ac887c300fd96c010c53014f66a28 Main script to run the translational model (single sequence + reference transcriptome)
make_rate_struct_pl.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 448 B - MD5: bcf922dc4d328ee9a3127768cb66d6e4 Helper script to MAIN scripts.
MATLAB_DEPENDENCY_REPORT.xlsx Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MS Excel Spreadsheet - 12.0 KB - MD5: ccac6c7205ad84dd570580df8d6c17b3
Metabolites.dat Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences Fixed Field Text Data - 1.9 KB - MD5: 3fbf358a46fe445075c188916b3ee4ea
MOD_met_kinetics.m Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences MATLAB Source Code - 3.4 KB - MD5: 0716bad7ec7ac8ec5019a99f899f2ef5 Stores kinetic information/parameters.

Hybrid_energy_octamers_library.mat

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Data - 194.2 KB -

IF_balance.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 1.7 KB -

Helper script to MAIN scripts.

main_config_eco_single_sequence.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 808 B -

Configuration script for to set target sequence and specify hybridization file if necessary; is called by 'MAIN_single_sequence.m'

main_config_eco_single_sequence_plus_reference_transcriptome.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 577 B -

Configuration script for to set target sequence plus reference transcriptome sequences; is called by 'MAIN_single_sequence_plus_reference_transcriptome.m'

MAIN_single_sequence.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 11.1 KB -

Main script to run the translational model (single sequence)

MAIN_single_sequence_plus_reference_transcriptome.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 11.3 KB -

Main script to run the translational model (single sequence + reference transcriptome)

make_rate_struct_pl.m

Dec 19, 2024 - Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Reliably Identifies Well-Adapted and Optimized RNA Sequences

MATLAB Source Code - 448 B -

Helper script to MAIN scripts.