Mathematical modeling and simulation of cellular systems

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11 to 20 of 22 Results

MCMC_sampling_pypesto_workflow.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 10.1 KB - MD5: 799aec9a1f707be058aceb3aee3f3bed Python script to perform MCMC sampling on the CBSD model using the PEtab files
Pypesto_Parameter_Estimation.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 3.4 KB - MD5: 7c6b8e987ef2a9a70be164d7cc7473de Python script to calibrate the CBSD model using the PEtab files
Conversion_Mat_files_V2p1_darus.py Apr 9, 2024 - MRI based perfusion of rats with 60% PVL Python Source Code - 3.2 KB - MD5: 069279f5c3f88174e068fb86fead4956
MRI_voxel_data_converted_V21.tab Apr 9, 2024 - MRI based perfusion of rats with 60% PVL Tabular Data - 975.4 KB - 5 Variables, 22145 Observations - UNF:6:sQocf/P7vdAmWMQR6rEEJw==
PVL_ROI_V2.1.zip Apr 9, 2024 - MRI based perfusion of rats with 60% PVL ZIP Archive - 253.7 KB - MD5: ab623a378ff0a0b286e75ed76379cc92
Influence of steatosis on drug metabolization dynamics in mice - validation broad prior.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 810.7 MB - MD5: 71bbc489782cf6c1cde7d22ad272167a BayModTS results of the steatosis application using a broader prior for validation.
Influence of steatosis on drug metabolization dynamics in mice.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 794.7 MB - MD5: 59ebfc89816bc3c3ce5c5dcea77237b4 PEtab files and results of the BayModTS steatosis application.
Influence of steatosis on drug metabolization - Pharmacokinetic model.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 279.0 MB - MD5: bb20d18e0d920146e7e17cf273efc286 Application of the BayModTS workflow to the steatosis data, replacing the Retarded Transient Functions (RTFs) with a mechanistic pharmacokinetic model.
Postoperative liver regeneration after resection - validation broader prior.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 228.2 MB - MD5: d0d04b3f5de2c6beb86e0ec050f9f87c BayModTS results of the liver regeneration example using a broader prior for validation. The data was generated under the ZeLeR-study (ethical vote: 2018- 1246-Material).
Postoperative liver regeneration after resection.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 235.3 MB - MD5: a773c2789331928ce36e310682da4360 PEtab files and results of the BayModTS liver regeneration example. The data was generated under the ZeLeR-study (ethical vote: 2018- 1246-Material).

MCMC_sampling_pypesto_workflow.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 10.1 KB -

Python script to perform MCMC sampling on the CBSD model using the PEtab files

Pypesto_Parameter_Estimation.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 3.4 KB -

Python script to calibrate the CBSD model using the PEtab files

Conversion_Mat_files_V2p1_darus.py

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

Python Source Code - 3.2 KB -

MRI_voxel_data_converted_V21.tab

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

Tabular Data - 975.4 KB - 5 Variables, 22145 Observations -

PVL_ROI_V2.1.zip

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

ZIP Archive - 253.7 KB -

Influence of steatosis on drug metabolization dynamics in mice - validation broad prior.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 810.7 MB -

BayModTS results of the steatosis application using a broader prior for validation.

Influence of steatosis on drug metabolization dynamics in mice.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 794.7 MB -

PEtab files and results of the BayModTS steatosis application.

Influence of steatosis on drug metabolization - Pharmacokinetic model.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 279.0 MB -

Application of the BayModTS workflow to the steatosis data, replacing the Retarded Transient Functions (RTFs) with a mechanistic pharmacokinetic model.

Postoperative liver regeneration after resection - validation broader prior.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 228.2 MB -

BayModTS results of the liver regeneration example using a broader prior for validation. The data was generated under the ZeLeR-study (ethical vote: 2018- 1246-Material).

Postoperative liver regeneration after resection.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 235.3 MB -

PEtab files and results of the BayModTS liver regeneration example. The data was generated under the ZeLeR-study (ethical vote: 2018- 1246-Material).

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