Mathematical modeling and simulation of cellular systems

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

11 to 20 of 25 Results

get_boundaries_v9.ijm Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Unknown - 12.1 KB - MD5: e1a4c3d561bd5afb7abdf253deb07962 Script used for the IF images segmentation and analysis for classification into E-cad and N-Cad positive cells
MCMC_sampling_pypesto_workflow.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 10.1 KB - MD5: 799aec9a1f707be058aceb3aee3f3bed Python script to perform MCMC sampling on the CBSD model using the PEtab files
Pypesto_Parameter_Estimation.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 3.4 KB - MD5: 7c6b8e987ef2a9a70be164d7cc7473de Python script to calibrate the CBSD model using the PEtab files
MRI based perfusion of rats with 60% PVL Apr 9, 2024 Herrmann, Karl-Heinz; Zhao, Wan-Ting; Höpfl, Sebastian; Reichenbach, Jürgen R., 2024, "MRI based perfusion of rats with 60% PVL", https://doi.org/10.18419/DARUS-3878, DaRUS, V1, UNF:6:sQocf/P7vdAmWMQR6rEEJw== [fileUNF] The study investigates in vivo liver perfusion in rats. Perfusion of ligated and non-ligated liver lobes of 25 rats was monitored via MRI. Rats were subjected to 60% Portal Vein Ligation (PVL). Experimentally, the left stem of the portal vein (supplying Left Median (LML) and Left Lateral Lobe (LLL)) and the right stem to the Right Lobe (RL) were li...
Conversion_Mat_files_V2p1_darus.py Apr 9, 2024 - MRI based perfusion of rats with 60% PVL Python Source Code - 3.2 KB - MD5: 069279f5c3f88174e068fb86fead4956
MRI_voxel_data_converted_V21.tab Apr 9, 2024 - MRI based perfusion of rats with 60% PVL Tabular Data - 975.4 KB - 5 Variables, 22145 Observations - UNF:6:sQocf/P7vdAmWMQR6rEEJw==
PVL_ROI_V2.1.zip Apr 9, 2024 - MRI based perfusion of rats with 60% PVL ZIP Archive - 253.7 KB - MD5: ab623a378ff0a0b286e75ed76379cc92
Bayesian Modeling of Time Series Data (BayModTS) Apr 8, 2024 Höpfl, Sebastian, 2024, "Bayesian Modeling of Time Series Data (BayModTS)", https://doi.org/10.18419/DARUS-3876, DaRUS, V1 BayModTS is a FAIR workflow for processing highly variable and sparse data. The code and results of the examples in the BayModTS paper are stored in this repository. A maintained version of BayModTS that can be applied to your personal applications can be found on Git Hub.
Influence of steatosis on drug metabolization dynamics in mice - validation broad prior.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 810.7 MB - MD5: 71bbc489782cf6c1cde7d22ad272167a BayModTS results of the steatosis application using a broader prior for validation.
Influence of steatosis on drug metabolization dynamics in mice.zip Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS) ZIP Archive - 794.7 MB - MD5: 59ebfc89816bc3c3ce5c5dcea77237b4 PEtab files and results of the BayModTS steatosis application.

get_boundaries_v9.ijm

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Unknown - 12.1 KB -

Script used for the IF images segmentation and analysis for classification into E-cad and N-Cad positive cells

MCMC_sampling_pypesto_workflow.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 10.1 KB -

Python script to perform MCMC sampling on the CBSD model using the PEtab files

Pypesto_Parameter_Estimation.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 3.4 KB -

Python script to calibrate the CBSD model using the PEtab files

MRI based perfusion of rats with 60% PVL

Apr 9, 2024

Herrmann, Karl-Heinz; Zhao, Wan-Ting; Höpfl, Sebastian; Reichenbach, Jürgen R., 2024, "MRI based perfusion of rats with 60% PVL", https://doi.org/10.18419/DARUS-3878, DaRUS, V1, UNF:6:sQocf/P7vdAmWMQR6rEEJw== [fileUNF]

The study investigates in vivo liver perfusion in rats. Perfusion of ligated and non-ligated liver lobes of 25 rats was monitored via MRI. Rats were subjected to 60% Portal Vein Ligation (PVL). Experimentally, the left stem of the portal vein (supplying Left Median (LML) and Left Lateral Lobe (LLL)) and the right stem to the Right Lobe (RL) were li...

Conversion_Mat_files_V2p1_darus.py

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

Python Source Code - 3.2 KB -

MRI_voxel_data_converted_V21.tab

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

Tabular Data - 975.4 KB - 5 Variables, 22145 Observations -

PVL_ROI_V2.1.zip

Apr 9, 2024 - MRI based perfusion of rats with 60% PVL

ZIP Archive - 253.7 KB -

Bayesian Modeling of Time Series Data (BayModTS)

Apr 8, 2024

Höpfl, Sebastian, 2024, "Bayesian Modeling of Time Series Data (BayModTS)", https://doi.org/10.18419/DARUS-3876, DaRUS, V1

BayModTS is a FAIR workflow for processing highly variable and sparse data. The code and results of the examples in the BayModTS paper are stored in this repository. A maintained version of BayModTS that can be applied to your personal applications can be found on Git Hub.

Influence of steatosis on drug metabolization dynamics in mice - validation broad prior.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 810.7 MB -

BayModTS results of the steatosis application using a broader prior for validation.

Influence of steatosis on drug metabolization dynamics in mice.zip

Apr 8, 2024 - Bayesian Modeling of Time Series Data (BayModTS)

ZIP Archive - 794.7 MB -

PEtab files and results of the BayModTS steatosis application.

Add Data

Share Dataverse

Link Dataverse

Reset Modifications