Institute for Stochastics and Applications

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11 to 20 of 41 Results

MCMC_sampling_pypesto_workflow.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 10.1 KB - MD5: 799aec9a1f707be058aceb3aee3f3bed Python script to perform MCMC sampling on the CBSD model using the PEtab files
Pypesto_Parameter_Estimation.py Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells Python Source Code - 3.4 KB - MD5: 7c6b8e987ef2a9a70be164d7cc7473de Python script to calibrate the CBSD model using the PEtab files
Simulation_Sphingolipid_rheostat_with_estimated_parameters.ipynb Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a Jupyter Notebook - 883.0 KB - MD5: b7d7aa8ba9c53cc91fd1a89b37093801 File to simulate the PEtab file with the estimated paramters and to create the graphs shown in the paper
Sphingolipid_rheostat_Cer_activation_Cer.png Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a PNG Image - 30.3 KB - MD5: 61fbc95ab20a230836d0215c66467a4c Visualization of the ceramide fits
Sphingolipid_rheostat_Cer_activation_Pypesto_Parameters.hdf5 Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a Hierarchical Data Format - 2.3 MB - MD5: 888fc04bf67953d707da6f4739b6d7a8 Estimated parameters in hdf5 format
Sphingolipid_rheostat_Cer_activation_Pypesto_Parameters_optimization_dictionary.json Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a JSON - 433 B - MD5: 60a86eb5ee0cee8adcb0caeeeb23f6f8 Inferred parameters of the rheostat model
Sphingolipid_rheostat_Cer_activation_S1P.png Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a PNG Image - 28.0 KB - MD5: 95398fc849c74c43a81382e7e7826cd6 Visualization of the S1P fits
Sphingolipid_rheostat_Cer_activation_simulationData.tab Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a Tabular Data - 3.4 KB - 7 Variables, 58 Observations - UNF:6:HQBqU3URE9FnG0Dn0xbRLw==
Sphingolipid_rheostat_Cer_activation_Sphinga.png Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a PNG Image - 34.5 KB - MD5: 4d2ba629ceaae7e34bbe63730c1a62a2 Visualization of the sphinganine fits
Sphingolipid_rheostat_Cer_activation_Sphingo.png Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a PNG Image - 34.2 KB - MD5: 5b4f5248bfeb23bcfbe45d1657c42c60 Visualization of the Sphingosine fits

MCMC_sampling_pypesto_workflow.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 10.1 KB -

Python script to perform MCMC sampling on the CBSD model using the PEtab files

Pypesto_Parameter_Estimation.py

Mar 21, 2025 - DLC1 knockdown in EMT in MCF10A cells

Python Source Code - 3.4 KB -

Python script to calibrate the CBSD model using the PEtab files

Simulation_Sphingolipid_rheostat_with_estimated_parameters.ipynb

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

Jupyter Notebook - 883.0 KB -

File to simulate the PEtab file with the estimated paramters and to create the graphs shown in the paper

Sphingolipid_rheostat_Cer_activation_Cer.png

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

PNG Image - 30.3 KB -

Visualization of the ceramide fits

Sphingolipid_rheostat_Cer_activation_Pypesto_Parameters.hdf5

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

Hierarchical Data Format - 2.3 MB -

Estimated parameters in hdf5 format

Sphingolipid_rheostat_Cer_activation_Pypesto_Parameters_optimization_dictionary.json

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

JSON - 433 B -

Inferred parameters of the rheostat model

Sphingolipid_rheostat_Cer_activation_S1P.png

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

PNG Image - 28.0 KB -

Visualization of the S1P fits

Sphingolipid_rheostat_Cer_activation_simulationData.tab

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

Tabular Data - 3.4 KB - 7 Variables, 58 Observations -

Sphingolipid_rheostat_Cer_activation_Sphinga.png

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

PNG Image - 34.5 KB -

Visualization of the sphinganine fits

Sphingolipid_rheostat_Cer_activation_Sphingo.png

Apr 11, 2024 - Modeling the sphingolipid rheostat under wild-type and hypomorph Hai1a

PNG Image - 34.2 KB -

Visualization of the Sphingosine fits

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