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1 to 10 of 14 Results
The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins
Sep 30, 2019 - Bioinformatics
Bauer, Tabea, 2019, "The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins", https://doi.org/10.18419/darus-458, DaRUS, V1, UNF:6:pbQRgDXU4w7vnxyqxzzuRQ== [fileUNF]
To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase superfamilies 8 to 12 were selected from the Lipase Engineering Database (https://led.biocatnet.de/). Th...
Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19
May 20, 2021 - Glycoside Hydrolase 19 Engineering Database
Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]
The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...
Query sequences for the update of the LccED
Jan 27, 2020 - Bioinformatics
Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF]
Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).
Query sequences for the update of the ExED
Jan 30, 2020 - Expansin Engineering Database
Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]
Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).
Profile hidden Markov models of the ExED
Jan 30, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED", https://doi.org/10.18419/darus-623, DaRUS, V1
Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins.
Profile hidden Markov model for PETase homologues
Dec 1, 2021 - PAZy
Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]
Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...
Occurrence of expansins in the tree of life
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/darus-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature.
GraphML files for sequence networks of PETases and PURases
Dec 1, 2021 - PAZy
Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/darus-2054, DaRUS, V1
The GraphML files contain the sequence networks and annotated metadata for protein sequences.
GraphML files for protein sequence networks of expansin homologues
Jan 30, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1
GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr...
GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases
May 3, 2021 - Bioinformatics
Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/darus-817, DaRUS, V1
Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.
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