Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)
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1 to 10 of 15 Results
Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19
May 20, 2021
Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]
The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...
GH19ED.tab
May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19
Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Jun 1, 2020
Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1
A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s...
CHITs.hmm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 110.9 KB - MD5: 9c4c77ebc1b7f7a3c4c4f9bf713aa7fe
Profile hidden Markov model in HMMER format for the chitinase superfamily
ELYSs.hmm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 81.4 KB - MD5: 61d6a4adfde821f447d18458a00e7667
Profile hidden Markov model in HMMER format for the endolysin superfamily
Reference_alignment_CHITs.aln
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 15.9 KB - MD5: 1de23a931f1988e2e26fa21ca210605c
Clustal alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_CHITs.stockholm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 18.2 KB - MD5: 116056d1f562c17e3a2b0ebe8714d0fe
Stockholm alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_ELYSs.aln
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.stockholm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Jun 1, 2020
Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).
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