Expansin Engineering Database

Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/)

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1 to 10 of 21 Results

CBM63_expansin_domains_score20.tab Jun 16, 2020 - Expansin domains in CBM63 sequences Tabular Data - 8.4 KB - 1 Variables, 567 Observations - UNF:6:i7aLIL6weIF8nhTjUBKf+g== Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20.
CBM63_Sfams123_210-300_90_50.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 70.6 MB - MD5: 51c315706ee9f262b816ee2654172d0e Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...
CBM63sequences.tab Jan 30, 2020 - Expansin domains in CBM63 sequences Tabular Data - 8.1 KB - 1 Variables, 510 Observations - UNF:6:9nlqS8HIWJ5ngSIjGG58OQ== Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 35.
Conserved_amino_acids_in_C-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA== Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...
Conserved_amino_acids_in_N-terminal_domain.tab Apr 9, 2020 - Conserved positions in expansin homologues Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA== Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...
Expansins_CterminalDomain_2.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 2.8 KB - MD5: 4fac8317bd493c0e87d9a2014528f6e8 Clustal alignment for the C-terminal expansin domain
Expansins_CterminalDomain_2.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 37.8 KB - MD5: bff77f04191cafcd2319527717ff504a Profile hidden Markov model in HMMER format for the C-terminal expansin domain
Expansins_CterminalDomain_2.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 3.4 KB - MD5: 63ce826a9b671db8c19d19e59f7fa67f Stockholm alignment for the C-terminal expansin domain
Expansins_NterminalDomain_9.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.6 KB - MD5: 010dfcb74e481bcc072eb4bef298b5d8 Clustal alignment for the N-terminal expansin domain
Expansins_NterminalDomain_9.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 50.5 KB - MD5: 84663760c0d987f0b92761ca71a83d6a Profile hidden Markov model in HMMER format for the N-terminal expansin domain

CBM63_expansin_domains_score20.tab

Jun 16, 2020 - Expansin domains in CBM63 sequences

Tabular Data - 8.4 KB - 1 Variables, 567 Observations -

Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20.

CBM63_Sfams123_210-300_90_50.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 70.6 MB -

Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...

CBM63sequences.tab

Jan 30, 2020 - Expansin domains in CBM63 sequences

Tabular Data - 8.1 KB - 1 Variables, 510 Observations -

Conserved_amino_acids_in_C-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 7.3 KB - 8 Variables, 85 Observations -

Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...

Conserved_amino_acids_in_N-terminal_domain.tab

Apr 9, 2020 - Conserved positions in expansin homologues

Tabular Data - 9.8 KB - 8 Variables, 123 Observations -

Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (...

Expansins_CterminalDomain_2.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 2.8 KB -

Clustal alignment for the C-terminal expansin domain

Expansins_CterminalDomain_2.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 37.8 KB -

Profile hidden Markov model in HMMER format for the C-terminal expansin domain

Expansins_CterminalDomain_2.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 3.4 KB -

Stockholm alignment for the C-terminal expansin domain

Expansins_NterminalDomain_9.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.6 KB -

Clustal alignment for the N-terminal expansin domain

Expansins_NterminalDomain_9.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 50.5 KB -

Profile hidden Markov model in HMMER format for the N-terminal expansin domain

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