41 to 50 of 77 Results
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA==
Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (... |
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA==
Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (... |
Apr 9, 2020 - Expansin Engineering Database
Buchholz, Patrick C. F., 2020, "Expansin homologues in actinobacterial genomes from South Africa", https://doi.org/10.18419/darus-699, DaRUS, V1
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of the Expansin Engineering Database (ExED) for the identification of expansin domains. The original nucl... |
Unknown - 1.3 KB -
MD5: 00f8e0957e042214a2c935343fae28f9
FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020. |
Unknown - 4.0 KB -
MD5: 7dbd7e182fdf07bf4bd300fbd68ed0a4
FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020. |
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/darus-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. |
Apr 9, 2020 -
Occurrence of expansins in the tree of life
Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA==
Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020):
Name of the taxonomic superkingdom;
Name of the (major) taxonomic group reported in Chase et al. 2020;
Lineage contains ex... |
Apr 2, 2020
Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/) |
Jan 30, 2020 -
Expansin domains in CBM63 sequences
Tabular Data - 8.1 KB - 1 Variables, 510 Observations - UNF:6:9nlqS8HIWJ5ngSIjGG58OQ==
Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 35. |
Jan 30, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1
GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr... |