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File Type: Tabular Data

1 to 10 of 15 Results

Update_2_Centroids_USEARCH.tab Jan 30, 2020 - Query sequences for the update of the ExED Tabular Data - 505 B - 1 Variables, 25 Observations - UNF:6:eFcDsa8udm3F11lB7M2q6w== Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.
Templates.tab Dec 1, 2021 - Profile hidden Markov model for PETase homologues Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw== Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
Taxonomic_analysis.tab Apr 9, 2020 - Occurrence of expansins in the tree of life Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA== Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains ex...
seeds_accession.tab Jan 27, 2020 - Query sequences for the update of the LccED Tabular Data - 25.8 KB - 1 Variables, 1260 Observations - UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).
RCE.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.5 KB - 9 Variables, 41 Observations - UNF:6:bklMJ1HASVPCxiIVaP7wyQ== RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv
PSML.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.1 KB - 9 Variables, 35 Observations - UNF:6:XqW8mARoKShCASUYwLo1pA== PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv
HPL.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 601 B - 9 Variables, 10 Observations - UNF:6:/rbtvGkBUcWV/wLnakHqRg== HPL (human pancreatic lipase) spreadsheet of Supplements01-1.xlsx as csv
HEP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 10.0 KB - 9 Variables, 154 Observations - UNF:6:bAQkev4V9Lkkkj8oTELKlg== HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv
GH19ED.tab May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
DPPIV.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 7.0 KB - 9 Variables, 103 Observations - UNF:6:ZKUns1L0wMyZIEclSuHQVQ== DPPIV (human dipeptidyl peptidase IV) spreadsheet of Supplements01-1.xlsx as csv

Update_2_Centroids_USEARCH.tab

Jan 30, 2020 - Query sequences for the update of the ExED

Tabular Data - 505 B - 1 Variables, 25 Observations -

Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.

Templates.tab

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Tabular Data - 255 B - 3 Variables, 12 Observations -

Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE

Taxonomic_analysis.tab

Apr 9, 2020 - Occurrence of expansins in the tree of life

Tabular Data - 4.0 KB - 6 Variables, 90 Observations -

Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020): Name of the taxonomic superkingdom; Name of the (major) taxonomic group reported in Chase et al. 2020; Lineage contains ex...

seeds_accession.tab

Jan 27, 2020 - Query sequences for the update of the LccED

Tabular Data - 25.8 KB - 1 Variables, 1260 Observations -

Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).

RCE.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.5 KB - 9 Variables, 41 Observations -

RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv

PSML.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.1 KB - 9 Variables, 35 Observations -

PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv

HPL.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 601 B - 9 Variables, 10 Observations -

HPL (human pancreatic lipase) spreadsheet of Supplements01-1.xlsx as csv