21 to 30 of 56 Results
Unknown - 18.2 KB -
MD5: 116056d1f562c17e3a2b0ebe8714d0fe
Stockholm alignment for the profile hidden Markov model of the chitinase superfamily |
Unknown - 394.5 KB -
MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily |
Unknown - 419.3 KB -
MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily |
Unknown - 20.3 KB -
MD5: 1961bf93199d823fa0fb953e5e120100
FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession. |
GraphML Network Data - 14.3 MB -
MD5: a314980fa659092d23cfda60fb45929a
Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database.
The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch... |
GraphML Network Data - 5.6 MB -
MD5: f255b9e12d219a65533643ae3b529282
Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database.
The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch... |
GraphML Network Data - 72.1 MB -
MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75
Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque... |
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 7.3 KB - 8 Variables, 85 Observations - UNF:6:CE90w0ai1+p+rVxLddj0OA==
Conserved positions in the C-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (... |
Apr 9, 2020 -
Conserved positions in expansin homologues
Tabular Data - 9.8 KB - 8 Variables, 123 Observations - UNF:6:ztPrC1aaxgvhz6A2pKE7oA==
Conserved positions in the N-terminal expansin domain with standard numbering according to PDB entry 4FER (Bacillus subtilis EXLX1, first column). The amino acids and their occurrence in % are given for different groups of sequences: (Bacteria (column 2), Fungi (column 3), EXPA (... |
Unknown - 1.3 KB -
MD5: 00f8e0957e042214a2c935343fae28f9
FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020. |