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31 to 40 of 77 Results
Reference_alignment_ELYSs.aln
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.stockholm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database
Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).
Seed_sequences.fasta
Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Unknown - 20.3 KB - MD5: 1961bf93199d823fa0fb953e5e120100
FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.
GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database
Orlando, Marco, 2020, "GraphML files for protein sequence networks of glycoside hydrolase 19 homologues", https://doi.org/10.18419/darus-802, DaRUS, V1
GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of 90% sequence identity to derive representative sequences. Pairwise sequence identity between two seque...
CHITs_60_percent_identity_cutoff.graphml
Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
GraphML Network Data - 14.3 MB - MD5: a314980fa659092d23cfda60fb45929a
Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...
ELYSs_60_percent_identity_cutoff.graphml
Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
GraphML Network Data - 5.6 MB - MD5: f255b9e12d219a65533643ae3b529282
Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...
GH19_40_percent_identity_cutoff.graphml
Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues
GraphML Network Data - 72.1 MB - MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75
Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque...
Glycoside Hydrolase 19 Engineering Database(Universität Stuttgart)
May 18, 2020
Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)
Conserved positions in expansin homologues
Apr 9, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Conserved positions in expansin homologues", https://doi.org/10.18419/darus-735, DaRUS, V1, UNF:6:HemykMznkJ0tyrf89mswkg== [fileUNF]
Conserved positions in the N- and C-terminal expansin domains of different groups from the Expansin Engineering Database (occurring in at least 70% of the annotated sequence entries). The expansin domains were annotated using hmmscan (from the HMMER software suite) against all se...
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