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41 to 50 of 77 Results

hits_aa.fasta Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa Unknown - 1.3 KB - MD5: 00f8e0957e042214a2c935343fae28f9 FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
HEP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 10.0 KB - 9 Variables, 154 Observations - UNF:6:bAQkev4V9Lkkkj8oTELKlg== HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv
GraphML files for sequence networks of PETases and PURases Dec 1, 2021 - PAZy Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/darus-2054, DaRUS, V1 The GraphML files contain the sequence networks and annotated metadata for protein sequences.
GraphML files for protein sequence networks of glycoside hydrolase 19 homologues Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "GraphML files for protein sequence networks of glycoside hydrolase 19 homologues", https://doi.org/10.18419/darus-802, DaRUS, V1 GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of 90% sequence identity to derive representative sequences. Pairwise sequence identity between two seque...
GraphML files for protein sequence networks of expansin homologues Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1 GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr...
GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases May 3, 2021 Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/darus-817, DaRUS, V1 Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.
Glycoside Hydrolase 19 Engineering Database(Universität Stuttgart) May 18, 2020 Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)
GH45_Sfam_1234_Ndomain_90_30.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 178.7 MB - MD5: afaa6dd751225c3dfb4a7702ad979993 Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...
GH19ED.tab May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 Tabular Data - 5.0 MB - 9 Variables, 22461 Observations - UNF:6:zi8TRxkq1C/pCN14pXTA0Q==
GH19_40_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 72.1 MB - MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75 Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque...

hits_aa.fasta

Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa

Unknown - 1.3 KB -

FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.

HEP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 10.0 KB - 9 Variables, 154 Observations -

HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv

GraphML files for sequence networks of PETases and PURases

Dec 1, 2021 - PAZy

Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/darus-2054, DaRUS, V1

The GraphML files contain the sequence networks and annotated metadata for protein sequences.

GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "GraphML files for protein sequence networks of glycoside hydrolase 19 homologues", https://doi.org/10.18419/darus-802, DaRUS, V1

GraphML files for undirected weighted graphs with nodes that represent protein sequences of glycoside hydrolase 19 homologues. Protein sequences were clustered by a threshold of 90% sequence identity to derive representative sequences. Pairwise sequence identity between two seque...

GraphML files for protein sequence networks of expansin homologues

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1

GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr...

GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases

May 3, 2021

Buchholz, Patrick C. F., 2021, "GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases", https://doi.org/10.18419/darus-817, DaRUS, V1

Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.

Glycoside Hydrolase 19 Engineering Database(Universität Stuttgart)

May 18, 2020

Supporting information and original files for bioinformatic investigations using the Glycoside Hydrolase 19 Engineering Database (https://gh19ed.biocatnet.de/)

GH45_Sfam_1234_Ndomain_90_30.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 178.7 MB -

Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...

GH19ED.tab

May 20, 2021 - Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

Tabular Data - 5.0 MB - 9 Variables, 22461 Observations -

GH19_40_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 72.1 MB -

Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque...

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