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11 to 20 of 77 Results
Sfam11_09_60sim.graphml
Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases
GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f
Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19
May 20, 2021 - Glycoside Hydrolase 19 Engineering Database
Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]
The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...
seeds_accession.tab
Jan 27, 2020 - Query sequences for the update of the LccED
Tabular Data - 25.8 KB - 1 Variables, 1260 Observations - UNF:6:hIeqwMgxpY0QZZZ4FAMRvg==
Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).
seeds.fasta
Jan 27, 2020 - Query sequences for the update of the LccED
Unknown - 711.0 KB - MD5: 183e995371de29d926c275458b38fdf6
Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Laccase and Multicopper Oxidase Engineering Database.
Seed_sequences.fasta
Jun 1, 2020 - Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Unknown - 20.3 KB - MD5: 1961bf93199d823fa0fb953e5e120100
FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession.
Seed sequences for the Glycoside Hydrolase 19 Engineering Database
Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database
Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/).
Reference_alignment_ELYSs.stockholm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 419.3 KB - MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_ELYSs.aln
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 394.5 KB - MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily
Reference_alignment_CHITs.stockholm
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 18.2 KB - MD5: 116056d1f562c17e3a2b0ebe8714d0fe
Stockholm alignment for the profile hidden Markov model of the chitinase superfamily
Reference_alignment_CHITs.aln
Jun 1, 2020 - Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database
Unknown - 15.9 KB - MD5: 1de23a931f1988e2e26fa21ca210605c
Clustal alignment for the profile hidden Markov model of the chitinase superfamily
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