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Publication Year: 2021

1 to 10 of 23 Results

Templates.tab Dec 1, 2021 - Profile hidden Markov model for PETase homologues Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw== Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
Sfam13_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 16.2 KB - MD5: e93342540254b2c25b2826343947b22b Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.
Sfam11_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19 May 20, 2021 - Glycoside Hydrolase 19 Engineering Database Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF] The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...
Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors May 3, 2021 Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/darus-1801, DaRUS, V1 Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.
Profile hidden Markov model for PETase homologues Dec 1, 2021 - PAZy Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF] Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...
PMH.hmm May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 232.1 KB - MD5: a570ab6b46dedfc2dffaea46aa542445 Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln
PMH.aln May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 61.7 KB - MD5: 68593cdf74879917c223c38d1a5de53d Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases
PMH-consensus.fasta May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 533 B - MD5: 0ed2f30d99bb5097faa06a79bed43ada FASTA file containing the consensus protein sequence of phosphonate monoester hydrolases based on the profile hidden Markov model in PMH.hmm
PET_local_08_55sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 5.8 MB - MD5: abddf6c05feb40d68c3c5cbed3f21d2b Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.

Templates.tab

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Tabular Data - 255 B - 3 Variables, 12 Observations -

Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE

Sfam13_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 16.2 KB -

Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.

Sfam11_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 557.2 KB -

Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.

Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19

May 20, 2021 - Glycoside Hydrolase 19 Engineering Database

Buchholz, Patrick C. F., 2021, "Sequence cross-references and taxonomic lineage for glycoside hydrolase family 19", https://doi.org/10.18419/darus-1163, DaRUS, V1, UNF:6:zi8TRxkq1C/pCN14pXTA0Q== [fileUNF]

The Glycoside Hydrolase 19 Engineering Database (GH19ED) contains information on protein sequences and structures of glycoside hydrolases from family 19. This dataset lists cross-references to the National Center for Biotechnology Information (NCBI), cross-references to the Prote...

Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors

May 3, 2021

Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/darus-1801, DaRUS, V1

Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.

Profile hidden Markov model for PETase homologues

Dec 1, 2021 - PAZy

Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]

Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...

PMH.hmm

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 232.1 KB -

Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln

PMH.aln

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 61.7 KB -

Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases

PMH-consensus.fasta

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 533 B -

FASTA file containing the consensus protein sequence of phosphonate monoester hydrolases based on the profile hidden Markov model in PMH.hmm

PET_local_08_55sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 5.8 MB -

Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.

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