Supplementary datasets for the publication "EnzymeML at work".
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1 to 10 of 24 Results
ABTS_Measurement.omex
Feb 15, 2022 - Oxidation of ABTS by Trametes versicolor laccase
Plain Text - 7.8 KB - MD5: 63e5dea9ce74e53c79186ed4999cfef5
AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Jupyter Notebook - 48.9 KB - MD5: f35f461622c4204a4e279458bccd14ce
Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.
AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Jupyter Notebook - 55.2 KB - MD5: 12615450c9a703b35f21a3e9af6f2a4f
Used to model the given OMEX EnzymeML archive using the Python package lmfit.
AnalysingTimeCourseDataUsingMichaelisMenten.ipynb
Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit
Jupyter Notebook - 164.0 KB - MD5: 9c8c06214cdad3b844fe75bed36dcbe1
Jupyter notebook that was used to model the OMEX archive found in this dataset.
CarboligationOfPyruvateCatalysedByHcAHAS_C_unit_Malzacher.omex
Feb 15, 2022 - Carboligation of Pyruvate catalysed by HcAHAS C Unit
Plain Text - 3.8 KB - MD5: d18217f667b4c14a4c3b1f0c0e20f148
Resulting OMEX file that was generated from the EnzymeML spreadsheet found in this dataset.
CollectingDataByBioCatHubAndVisualisation.ipynb
Feb 15, 2022 - Propioin Synthesis using Benzoin Aldolase
Jupyter Notebook - 20.9 KB - MD5: bc9c3f0840a676ccdc6b8804a5aaf583
Jupyter Notebook that was used to model the given OMEX EnzymeML archive
DeactivationOfGlucoseOxidase_Host.omex
Feb 15, 2022 - Deactivation of Glucose Oxidase
Plain Text - 10.5 KB - MD5: 7961fc2b94cc8cef2ae4d143021394e0
Desulfuration_Cysteine_Pinto.omex
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Unknown - 6.5 KB - MD5: ef8907a79459d27a988be27c5a245a4c
OMEX EnzymeML archive that was generated from the data using the given spreadsheet.
Desulfuration_Cysteine_Pinto_input_interferENZY.txt
Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU
Plain Text - 370 B - MD5: 679c41f97de6f72684385e95865cb715
Text file that is used as input for InterferEnzy
EnzymeML_Lagerman.omex
Feb 15, 2022 - Synthesis and Hydrolysis of Cephalexin
Plain Text - 5.9 KB - MD5: 6d77930a7448abb093a9d772af571261
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