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publicationDate: 2021

51 to 60 of 1,372 Results

GraphML files for sequence networks of PETases and PURases Dec 1, 2021 - Plastics-Active Enzymes Database Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/DARUS-2054, DaRUS, V1 The GraphML files contain the sequence networks and annotated metadata for protein sequences.
Profile hidden Markov model for PETase homologues Dec 1, 2021 - Plastics-Active Enzymes Database Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF] Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...
Data for: A Comparative Study of Visualizations for Multiple Time Series Dec 1, 2021 - Institut für Visualisierung und Interaktive Systeme Franke, Max; Knabben, Moritz; Lang, Julian; Koch, Steffen; Blascheck, Tanja, 2021, "Data for: A Comparative Study of Visualizations for Multiple Time Series", https://doi.org/10.18419/DARUS-2134, DaRUS, V1, UNF:6:jaMGOfSI5L/wPcnoJNKcaQ== [fileUNF] Study data of comparative study of visualizations for multiple time series including anonymized participant data from Prolific, data set generation scripts, source code for the study framework, and analysis scripts. This repository also serves as supplemental material for the publication titled "A Comparative Study of Visualizations for Multiple Ti...
Replication Data for: A Hard Templating Approach to Functional Mesoporous Poly(norborn-2-ene)-Based Monolithic Supports Nov 30, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF Acikalin, Hande; Ziegler, Felix; Buchmeiser, Michael, 2021, "Replication Data for: A Hard Templating Approach to Functional Mesoporous Poly(norborn-2-ene)-Based Monolithic Supports", https://doi.org/10.18419/DARUS-2243, DaRUS, V1, UNF:6:p82WcxeApActls7MElmKaA== [fileUNF] All primary data files of measurements and processed data of the journal article mentioned under related publications from Buchmeiser group can be found here. Further experimental for reproduction of experiments can be found in the Supporting Information. We report on the first ROMP-derived, poly(norborn-2-ene)-based monolithic supports with such t...
Replication data of Buchmeiser group for: "Confinement Effects for Efficient Macrocyclization Reactions with supported Cationic Molybdenum Imido Alkylidene N-Heterocyclic Carbene Complexes" Nov 30, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF Ziegler, Felix; Benedikter, Mathis; Wang, Dongren, 2021, "Replication data of Buchmeiser group for: "Confinement Effects for Efficient Macrocyclization Reactions with supported Cationic Molybdenum Imido Alkylidene N-Heterocyclic Carbene Complexes"", https://doi.org/10.18419/DARUS-2248, DaRUS, V1 All primary data files of measurements and processed data of the journal article mentioned under related publications from Buchmeiser group can be found here. The data is structured according to figures and schemes in the research article and contains the following data types: qps, txt, fid, mnova
Publication: Particulate systems(Universität Stuttgart) Nov 29, 2021Publications This dataverse includes research data based on investigations of particulate systems.
Data for: "Olefin Ring-closing Metathesis under Spatial Confinement and Continuous Flow" Nov 26, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF Ziegler, Felix, 2021, "Data for: "Olefin Ring-closing Metathesis under Spatial Confinement and Continuous Flow"", https://doi.org/10.18419/DARUS-1690, DaRUS, V1 The use of a 2nd-generation Hoveyda-Grubbs-type catalyst immobilized inside mesoporous silica for the application in selective macro(mono)cyclization (MMC) of an alpha,omega-diene under spatially confined and continuous-flow conditions. Data you will find: NMR-Data for the determination of conversion and selectivity of the macrocyclization. MALDI r...
Plastics-Active Enzymes Database(Universität Stuttgart) Nov 26, 2021Bioinformatics Supporting information and data for the PAZy database on plastics-active enzymes.
NGS data related to Bröhm et al.: Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3 Nov 25, 2021 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Bröhm, Alexander; Dukatz, Michael; Adam, Sabrina, 2021, "NGS data related to Bröhm et al.: Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3", https://doi.org/10.18419/DARUS-1252, DaRUS, V2 Methylation experiments: For the competitive nucleosome methylation experiments, 0.6 pmol of each nucleosome variant were digested with MluI (NEB) for 60 min at 37°C in 10 µL NEB Cutsmart buffer (50 mM KOAc/20 mM Tris-acetate pH 7.9, 10 mM Magnesium Acetate, 100 µg/mL BSA) to remove residual unbound DNA. Afterwards, DNMT3A2 or DNMT3AC was added to...
Supplementary material for 'Umbrella sampling and double decoupling data for methanol binding to Candida antarctica lipase B' Nov 25, 2021 - Molecular Simulation Markthaler, Daniel; Hansen, Niels, 2021, "Supplementary material for 'Umbrella sampling and double decoupling data for methanol binding to Candida antarctica lipase B'", https://doi.org/10.18419/DARUS-2104, DaRUS, V1 This dataset contains all relevant simulation input files (topologies, coordinates, simulation parameters), generated simulation output (final configurations, time series of collective variables) together with scripts used for set-up and analysis of the umbrella sampling and double decoupling simulations.

GraphML files for sequence networks of PETases and PURases

Dec 1, 2021 - Plastics-Active Enzymes Database

Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/DARUS-2054, DaRUS, V1

The GraphML files contain the sequence networks and annotated metadata for protein sequences.

Profile hidden Markov model for PETase homologues

Dec 1, 2021 - Plastics-Active Enzymes Database

Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]

Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...

Data for: A Comparative Study of Visualizations for Multiple Time Series

Dec 1, 2021 - Institut für Visualisierung und Interaktive Systeme

Franke, Max; Knabben, Moritz; Lang, Julian; Koch, Steffen; Blascheck, Tanja, 2021, "Data for: A Comparative Study of Visualizations for Multiple Time Series", https://doi.org/10.18419/DARUS-2134, DaRUS, V1, UNF:6:jaMGOfSI5L/wPcnoJNKcaQ== [fileUNF]

Study data of comparative study of visualizations for multiple time series including anonymized participant data from Prolific, data set generation scripts, source code for the study framework, and analysis scripts. This repository also serves as supplemental material for the publication titled "A Comparative Study of Visualizations for Multiple Ti...

Replication Data for: A Hard Templating Approach to Functional Mesoporous Poly(norborn-2-ene)-Based Monolithic Supports

Nov 30, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF

Acikalin, Hande; Ziegler, Felix; Buchmeiser, Michael, 2021, "Replication Data for: A Hard Templating Approach to Functional Mesoporous Poly(norborn-2-ene)-Based Monolithic Supports", https://doi.org/10.18419/DARUS-2243, DaRUS, V1, UNF:6:p82WcxeApActls7MElmKaA== [fileUNF]

All primary data files of measurements and processed data of the journal article mentioned under related publications from Buchmeiser group can be found here. Further experimental for reproduction of experiments can be found in the Supporting Information. We report on the first ROMP-derived, poly(norborn-2-ene)-based monolithic supports with such t...

Replication data of Buchmeiser group for: "Confinement Effects for Efficient Macrocyclization Reactions with supported Cationic Molybdenum Imido Alkylidene N-Heterocyclic Carbene Complexes"

Nov 30, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF

Ziegler, Felix; Benedikter, Mathis; Wang, Dongren, 2021, "Replication data of Buchmeiser group for: "Confinement Effects for Efficient Macrocyclization Reactions with supported Cationic Molybdenum Imido Alkylidene N-Heterocyclic Carbene Complexes"", https://doi.org/10.18419/DARUS-2248, DaRUS, V1

All primary data files of measurements and processed data of the journal article mentioned under related publications from Buchmeiser group can be found here. The data is structured according to figures and schemes in the research article and contains the following data types: qps, txt, fid, mnova

Publication: Particulate systems(Universität Stuttgart)

Nov 29, 2021Publications

This dataverse includes research data based on investigations of particulate systems.

Data for: "Olefin Ring-closing Metathesis under Spatial Confinement and Continuous Flow"

Nov 26, 2021 - SFB 1333 A1+B2 - Buchmeiser group, IPOC-MSF

Ziegler, Felix, 2021, "Data for: "Olefin Ring-closing Metathesis under Spatial Confinement and Continuous Flow"", https://doi.org/10.18419/DARUS-1690, DaRUS, V1

The use of a 2nd-generation Hoveyda-Grubbs-type catalyst immobilized inside mesoporous silica for the application in selective macro(mono)cyclization (MMC) of an alpha,omega-diene under spatially confined and continuous-flow conditions. Data you will find: NMR-Data for the determination of conversion and selectivity of the macrocyclization. MALDI r...

Plastics-Active Enzymes Database(Universität Stuttgart)

Nov 26, 2021Bioinformatics

Supporting information and data for the PAZy database on plastics-active enzymes.

NGS data related to Bröhm et al.: Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3

Nov 25, 2021 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Bröhm, Alexander; Dukatz, Michael; Adam, Sabrina, 2021, "NGS data related to Bröhm et al.: Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3", https://doi.org/10.18419/DARUS-1252, DaRUS, V2

Methylation experiments: For the competitive nucleosome methylation experiments, 0.6 pmol of each nucleosome variant were digested with MluI (NEB) for 60 min at 37°C in 10 µL NEB Cutsmart buffer (50 mM KOAc/20 mM Tris-acetate pH 7.9, 10 mM Magnesium Acetate, 100 µg/mL BSA) to remove residual unbound DNA. Afterwards, DNMT3A2 or DNMT3AC was added to...

Supplementary material for 'Umbrella sampling and double decoupling data for methanol binding to Candida antarctica lipase B'

Nov 25, 2021 - Molecular Simulation

Markthaler, Daniel; Hansen, Niels, 2021, "Supplementary material for 'Umbrella sampling and double decoupling data for methanol binding to Candida antarctica lipase B'", https://doi.org/10.18419/DARUS-2104, DaRUS, V1

This dataset contains all relevant simulation input files (topologies, coordinates, simulation parameters), generated simulation output (final configurations, time series of collective variables) together with scripts used for set-up and analysis of the umbrella sampling and double decoupling simulations.

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