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Jan 30, 2020 - Amplicon based bisulfite NGS data
Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina, 2020, "Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation", https://doi.org/10.18419/darus-628, DaRUS, V1
Methylation of random flank substrates: Libraries of double stranded DNA substrates with unmethylated or hemimethylated CpG sites in randomized sequence context were methlyated by DNMT1. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K f...
Jan 30, 2020 - Amplicon based bisulfite NGS data
Jeltsch, Albert; Bashtrykov, Pavel; Adam, Sabrina, 2020, "Deep enzymology data related to Adam et al.: DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation", https://doi.org/10.18419/darus-629, DaRUS, V1
Methylation of long hemimethylated DNA substrates: Methylation of the 349 bp long hemimethylated substrate with DNMT1 was carried out in 1X methylation buffer (100 mM HEPES, 1 mM EDTA, 0.5 mM DTT, 0.1 mg/mL BSA, pH 7.2 with KOH) in the presence of 1 mM AdoMet. For the methylation...
Jan 30, 2020 - Amplicon based bisulfite NGS data
Jeltsch, Albert; Bashtrykov, Pavel; Emperle, Max; Adam, Sabrina; Dukatz, Michael, 2020, "Deep enzymology data related to Gao et al.: Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms", https://doi.org/10.18419/darus-627, DaRUS, V1
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3A or DNMT3B. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K for 2 hours. Afterwards,...
Mar 12, 2020 - Publication: An open, modular, and flexible micro X-ray computed tomography system for research
Ruf, Matthias; Steeb, Holger, 2020, "micro-XRCT data set of open-pored asphalt concrete", https://doi.org/10.18419/darus-639, DaRUS, V1
micro-XRCT data set (projection and reconstructed images) resulting from a region of interest scan (diameter 48.41 mm, height 35.46 mm) located in the center of an open-pored asphalt concrete core with 100 mm diameter and 50 mm length.
May 28, 2020 - SFB-TRR 161 A02 "Quantifying Visual Computing Systems"
Bruder, Valentin; Müller, Christoph; Frey, Steffen; Ertl, Thomas, 2020, "Runtime performance measurements of interactive visualisation algorithms", https://doi.org/10.18419/darus-810, DaRUS, V1
Runtime performance measurements for GPU-based direct volume rendering and GPU-based raycasting of spherical particles on ten different discrete graphics processing units from AMD and NVIDIA. The data set at hand systematically evaluates typical factors influencing performance of...
Jun 22, 2020 - Publication: Crystalline rocks
Ruf, Matthias; Steeb, Holger, 2020, "micro-XRCT data set of Carrara marble with artificially created crack network: slow cooling down from 600°C", https://doi.org/10.18419/darus-754, DaRUS, V1
micro-XRCT data set (projections and reconstructed images) of a Carrara marble core with a diameter of 5 mm. The sample was extracted with a water-cooled diamond drill from a bigger sample with a diameter of 30 mm and a length of 80 mm which was before subjected to following ther...
Jun 22, 2020 - Publication: An open, modular, and flexible micro X-ray computed tomography system for research
Ruf, Matthias; Steeb, Holger, 2020, "micro-XRCT data set of Carrara marble with artificially created crack network: fast cooling down from 600°C", https://doi.org/10.18419/darus-682, DaRUS, V1
micro-XRCT data set (projection and reconstructed images) of a Carrara marble core with a diameter of 5 mm. The sample was extracted with a water-cooled diamond drill from a bigger sample with a diameter of 30 mm and a length of 80 mm which was before subjected to following therm...
Jul 8, 2020 - SFB-TRR 161 INF "Collaboration Infrastructure"
Müller, Christoph, 2020, "SFB/Transregio 161 Data Management Plan 2019-2023", https://doi.org/10.18419/darus-632, DaRUS, V1
The participating universities in SFB/Transregio 161 acknowledge the general importance of research data management as a vital issue for all of their work and provide increasing central support for long-term accessibility and reusability of data, documentation of methods and tool...
Jul 31, 2020 - Emmert2020a
Emmert, Simon; Class, Holger; Davis, Katherine; Gerlach, Robin, 2020, "Replication data for "Importance of Specific Substrate Utilization by Microbes in Microbially Enhanced Coal-Bed Methane Production: A Modelling Study"", https://doi.org/10.18419/darus-636, DaRUS, V1, UNF:6:etoZeSymT82caAlH+cVtVA== [fileUNF]
This contains the generated DuMuX model output (VTK files), extracted output (Python script) and plots (png) for the publication "Importance of Specific Substrate Utilization by Microbes in Microbially Enhanced Coal-Bed Methane Production: A Modelling Study" in International Jour...
Sep 1, 2020 - Amplicon based bisulfite NGS data
Jeltsch, Albert; Bashtrykov, Pavel; Dukatz, Michael; Adam, Sabrina, 2020, "Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.", https://doi.org/10.18419/darus-815, DaRUS, V3
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3B. Reactions were stopped by shock freezing in liquid nitrogen, then treated with proteinase K for 2 hours. Afterwards, the DNA w...
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