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Publication Year: 2021

131 to 140 of 46,777 Results

Sfam11_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
Sfam13_09_60sim.graphml Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases GraphML Network Data - 16.2 KB - MD5: e93342540254b2c25b2826343947b22b Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.
Profile hidden Markov model for PETase homologues Dec 1, 2021 - Plastics-Active Enzymes Database Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF] Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...
PET_09_tcoffee.aln Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 7.2 KB - MD5: e81a1a25f3e79e189a048e1a04756cbc Multiple sequence alignment in Clustal format.
PET_09_tcoffee.hmm Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 122.2 KB - MD5: 7fa623dde96d25f2919f75b497b2f657 Profile hidden Markov model in HMMER3 format
PET_09_tcoffee.sto Dec 1, 2021 - Profile hidden Markov model for PETase homologues Unknown - 6.1 KB - MD5: 7e6f4be4289d0fb3371ac4e777be14e9 Multiple sequence alignment in Stockholm format with reference columns: The trimmed alignment region is marked by an 'x' in lines starting with #=GC RF
Templates.tab Dec 1, 2021 - Profile hidden Markov model for PETase homologues Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw== Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
Data for: A Comparative Study of Visualizations for Multiple Time Series Dec 1, 2021 - Institut für Visualisierung und Interaktive Systeme Franke, Max; Knabben, Moritz; Lang, Julian; Koch, Steffen; Blascheck, Tanja, 2021, "Data for: A Comparative Study of Visualizations for Multiple Time Series", https://doi.org/10.18419/DARUS-2134, DaRUS, V1, UNF:6:jaMGOfSI5L/wPcnoJNKcaQ== [fileUNF] Study data of comparative study of visualizations for multiple time series including anonymized participant data from Prolific, data set generation scripts, source code for the study framework, and analysis scripts. This repository also serves as supplemental material for the publication titled "A Comparative Study of Visualizations for Multiple Ti...
4streamgraph.js Dec 1, 2021 - Data for: A Comparative Study of Visualizations for Multiple Time Series Javascript Code - 6.3 KB - MD5: 0f48291d815a75b4972620453756cb07
4timeSeries.js Dec 1, 2021 - Data for: A Comparative Study of Visualizations for Multiple Time Series Javascript Code - 49 B - MD5: 2d85e6ff9d06930018a30fb2265c7ba2

Sfam11_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 557.2 KB -

Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.

Sfam13_09_60sim.graphml

Dec 1, 2021 - GraphML files for sequence networks of PETases and PURases

GraphML Network Data - 16.2 KB -

Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.

Profile hidden Markov model for PETase homologues

Dec 1, 2021 - Plastics-Active Enzymes Database

Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/DARUS-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]

Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-COFFEE. A profile hidden Markov model (HMM) was derived from this mult...

PET_09_tcoffee.aln

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 7.2 KB -

Multiple sequence alignment in Clustal format.

PET_09_tcoffee.hmm

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 122.2 KB -

Profile hidden Markov model in HMMER3 format

PET_09_tcoffee.sto

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Unknown - 6.1 KB -

Multiple sequence alignment in Stockholm format with reference columns: The trimmed alignment region is marked by an 'x' in lines starting with #=GC RF

Templates.tab

Dec 1, 2021 - Profile hidden Markov model for PETase homologues

Tabular Data - 255 B - 3 Variables, 12 Observations -

Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE

Data for: A Comparative Study of Visualizations for Multiple Time Series

Dec 1, 2021 - Institut für Visualisierung und Interaktive Systeme

Franke, Max; Knabben, Moritz; Lang, Julian; Koch, Steffen; Blascheck, Tanja, 2021, "Data for: A Comparative Study of Visualizations for Multiple Time Series", https://doi.org/10.18419/DARUS-2134, DaRUS, V1, UNF:6:jaMGOfSI5L/wPcnoJNKcaQ== [fileUNF]

Study data of comparative study of visualizations for multiple time series including anonymized participant data from Prolific, data set generation scripts, source code for the study framework, and analysis scripts. This repository also serves as supplemental material for the publication titled "A Comparative Study of Visualizations for Multiple Ti...

4streamgraph.js

Dec 1, 2021 - Data for: A Comparative Study of Visualizations for Multiple Time Series

Javascript Code - 6.3 KB -

4timeSeries.js

Dec 1, 2021 - Data for: A Comparative Study of Visualizations for Multiple Time Series

Javascript Code - 49 B -

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