SFB-TRR 161 INF "Collaboration Infrastructure"

Project INF supports the other projects of SFB/Transregio 161 by providing a central approach to data management and an infrastructure for virtual meetings in a large, high-resolution display scenario.

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1 to 10 of 380 Results

Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Jun 11, 2025 Garkov, Dimitar; Lein, Etienne; Kielkopf, Niklas; Dullin, Christian; Klein, Karsten; Sommer, Bjorn; Jordan, Alex; Schreiber, Falk, 2025, "Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality", https://doi.org/10.18419/DARUS-4779, DaRUS, V1 This dataset contains the supplemental materials, the used tools, and the release of the software presented in the paper Interactive delineation and quantification of anatomical structure with virtual reality. The dataset is structured in the typical order of data processing: Imaging Tomographic Reconstruction Brainacle Software (Delineation, Quant...
N_Multi_8_180.tdf Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Hierarchical Data Format - 8.3 GB - MD5: 17a8463cd8bd77b1e9831c8afbeb18e6 An example TDF file obtained after imaging
Tissue_Embedding_Protocol.rtf Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Rich Text Format - 7.7 KB - MD5: c24fdf932112ce5169ca3a2f50b9421d The protocol using in the tissue embedding of the samples
N_Multi_8_180_corr_phrt.zip Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality ZIP Archive - 16.2 GB - MD5: e61eeb632022e0cebdabcd74de078a88 An example image sequence obtained after reconstruction
Reconstruction_Protocol_STP.pdf Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Adobe PDF - 115.6 KB - MD5: 126e03f72fa300a433a71b37e3779158 Processing steps and parameters for the reconstruction with STP v1.5.3
Brainacle.7z Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Compressed Archive - 31.1 MB - MD5: 56c8698b29c1b94b17d0ab46b2625e52 Brainacle v1.0
BrainacleJ-0.5.0.jar Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality application/java-archive - 48.4 KB - MD5: 071badfee7646059973c9b3f40a59784 An ImageJ plugin to support the export of isosurface meshes to Brainacle
ImageJMacros.zip Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality ZIP Archive - 1.4 KB - MD5: 69355ea68ad0817fd873491ab91d81ff Contains: an installer macro for autorun, and two macros for the import and export of coordinates from and to Brainacle. For instructions see Metadata.
ImageJ_Preparation_(Volume_visualisation).pdf Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality Adobe PDF - 56.7 KB - MD5: 30eb4d3cc627fc675c44c25690412270 Steps to prepare an image sequence in ImageJ for volume visualisation in Brainacle
N_Multi_8_180.nii.zip Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality ZIP Archive - 206.3 MB - MD5: 2fc7b880c94319043cca4dec41238dba Example data for Brainacle

Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Jun 11, 2025

Garkov, Dimitar; Lein, Etienne; Kielkopf, Niklas; Dullin, Christian; Klein, Karsten; Sommer, Bjorn; Jordan, Alex; Schreiber, Falk, 2025, "Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality", https://doi.org/10.18419/DARUS-4779, DaRUS, V1

This dataset contains the supplemental materials, the used tools, and the release of the software presented in the paper Interactive delineation and quantification of anatomical structure with virtual reality. The dataset is structured in the typical order of data processing: Imaging Tomographic Reconstruction Brainacle Software (Delineation, Quant...

N_Multi_8_180.tdf

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Hierarchical Data Format - 8.3 GB -

An example TDF file obtained after imaging

Tissue_Embedding_Protocol.rtf

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Rich Text Format - 7.7 KB -

The protocol using in the tissue embedding of the samples

N_Multi_8_180_corr_phrt.zip

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

ZIP Archive - 16.2 GB -

An example image sequence obtained after reconstruction

Reconstruction_Protocol_STP.pdf

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Adobe PDF - 115.6 KB -

Processing steps and parameters for the reconstruction with STP v1.5.3

Brainacle.7z

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Compressed Archive - 31.1 MB -

Brainacle v1.0

BrainacleJ-0.5.0.jar

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

application/java-archive - 48.4 KB -

An ImageJ plugin to support the export of isosurface meshes to Brainacle

ImageJMacros.zip

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

ZIP Archive - 1.4 KB -

Contains: an installer macro for autorun, and two macros for the import and export of coordinates from and to Brainacle. For instructions see Metadata.

ImageJ_Preparation_(Volume_visualisation).pdf

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

Adobe PDF - 56.7 KB -

Steps to prepare an image sequence in ImageJ for volume visualisation in Brainacle

N_Multi_8_180.nii.zip

Jun 11, 2025 - Software and Data for: Interactive delineation and quantification of anatomical structure with virtual reality

ZIP Archive - 206.3 MB -

Example data for Brainacle

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