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1 to 10 of 103 Results
Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics (Software and Data)
Jun 21, 2024
Bienroth, Denis; Charitakis, Natalie; Jaeger-Honz, Sabrina; Garkov, Dimitar; Elliott, David; Porrello, Enzo R.; Klein, Karsten; Nim, Hieu T.; Schreiber, Falk; Ramialison, Mirana, 2024, "Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics (Software and Data)", https://doi.org/10.18419/DARUS-4254, DaRUS, V1
Here, we summarise available data and source code regarding the publication "Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics". Abstract Spatially resolved transcriptomics (SRT) technologies produce complex, multi-dimensional data sets of gene expression information that can be obtained at subcellular s...
Documentation_VR-Omics.pdf
Jun 21, 2024 - Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics (Software and Data)
Adobe PDF - 75.2 MB - MD5: 2db5ca6463573d52064a02337e389c4c
Download instructions and documentation of VR-OMICS.
Test_Data_VR-Omics.zip
Jun 21, 2024 - Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics (Software and Data)
ZIP Archive - 3.0 GB - MD5: 8ca5463617e55fabd17cc70341c501eb
Test data generated for use with VR-Omics for different spatial transcriptomics sequencing techniqes.
VR_Omics.zip
Jun 21, 2024 - Spatially Resolved Transcriptomics Mining in 3D and Virtual Reality Environments with VR-Omics (Software and Data)
ZIP Archive - 4.9 GB - MD5: c4eeacd8cee7ac73b059d018b5df008e
Software VR-Omics (containing Python AW and Visualiser)
Research Data Summary for: "Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data"
Jun 19, 2024
Jaeger-Honz, Sabrina; Klein, Karsten; Schreiber, Falk, 2024, "Research Data Summary for: "Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data"", https://doi.org/10.18419/DARUS-4251, DaRUS, V1
Here, we summarise available data and source code regarding the publication "Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data". Abstract Computational methods such as molecular docking or molecular dynamics (MD) simulations have been developed to simulate and explore the interacti...
ifpaggvis-scripts-libraries.zip
Jun 19, 2024 - Research Data Summary for: "Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data"
ZIP Archive - 5.6 MB - MD5: ed032581e5849dfa3eed6916e7221d19
IFPAggVis library with tutorial notebooks (Documentation) and installation instructions.
Research Data: "APL@voro—interactive visualization and analysis of cell membrane simulations"
Jun 18, 2024
Kern, Martin; Jaeger-Honz, Sabrina; Schreiber, Falk; Sommer, Björn, 2024, "Research Data: "APL@voro—interactive visualization and analysis of cell membrane simulations"", https://doi.org/10.18419/DARUS-4252, DaRUS, V1
Here, we summarise available data and source code regarding the publication "APL@voro—interactive visualization and analysis of cell membrane simulations". Abstract Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing...
aplvoro-3.3.3-1.x86_64.rpm
Jun 18, 2024 - Research Data: "APL@voro—interactive visualization and analysis of cell membrane simulations"
Unknown - 14.1 MB - MD5: 4798607969c76125be911862a097e7f3
Pre-build rpm package
aplvoro_3.3.3_x64.deb
Jun 18, 2024 - Research Data: "APL@voro—interactive visualization and analysis of cell membrane simulations"
application/x-debian-package - 11.9 MB - MD5: 8dd786d8eb0d6f10429243605ce9e225
Pre-build debian package
aplvoro_deb.zip
Jun 18, 2024 - Research Data: "APL@voro—interactive visualization and analysis of cell membrane simulations"
ZIP Archive - 2.7 KB - MD5: 49567c6f27c29f36c97deb65612326ca
APL@Voro debian distribution
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