Institute for Theoretical Physics IV

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

1 to 10 of 11 Results

BD_trajectories.zip Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands' ZIP Archive - 5.7 GB - MD5: 2a1f0e8f6258c99ed7845e1907230288 Archive containing BD simulation trajectories
README.txt Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands' Plain Text - 1.3 KB - MD5: 53955c280b5b063cd1640e6b7daccfec Instructions on how data is organized
analysis.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 222.5 KB - MD5: 7b0deec17a46b036bd248e05dd4943d9 A folder which is used for the analysis of the Active Model B+ and the Model B with the extra cubic term.
simulations.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 336.5 MB - MD5: 4ff3c921aa8256d048b99627ec2e4e77 A folder which is used for the flow equations of the modified cKPZ and for the numerical simulations of the stochastic partial differential equation using py-pde.
tutorials.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 265.5 KB - MD5: 22587259898d336dcdaec655f0f4b40c A folder which introduces how to use the package ``restflow''.
MSMs.tar.gz Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Gzip Archive - 10.9 KB - MD5: 6750c8586d9f50f98a8a6dba9a566a78 Archive containing Jupyter notebooks which follow the modeling pipeline to the markov state modeling step and allow to reproduce latent spaces as well as MSMs.
ReadMe.txt Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Plain Text - 2.4 KB - MD5: df8fbd6c71eac443271c629757f89981 Text file describing the folder structure and data
e2e_dists.tar.gz Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Gzip Archive - 5.1 MB - MD5: fe94bb13a7edaf43d0dbd6ec5975d67f Archive containing the timeseries of the end-to-end distance of deca-alanine for each of the harvested trajectories in raw_data
FELs.tar.gz Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Gzip Archive - 241.1 MB - MD5: 7e1e0ba3455e249ee363ba3eea52c1a4 Archive containing interactive visualizations of the free energy landscape with its average structures in TICA/EncoderMap space
raw_data.tar.gz Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Gzip Archive - 481.2 MB - MD5: 04a1dfeb7bfbc98747501d83c54097db Archive containing the trajectories in xtc format harvested in the respective ensembles (biasing forces of 0-15 kJ/(mol nm))

BD_trajectories.zip

Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'

ZIP Archive - 5.7 GB -

Archive containing BD simulation trajectories

README.txt

Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'

Plain Text - 1.3 KB -

Instructions on how data is organized

analysis.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 222.5 KB -

A folder which is used for the analysis of the Active Model B+ and the Model B with the extra cubic term.

simulations.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 336.5 MB -

A folder which is used for the flow equations of the modified cKPZ and for the numerical simulations of the stochastic partial differential equation using py-pde.

tutorials.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 265.5 KB -

A folder which introduces how to use the package ``restflow''.

MSMs.tar.gz

Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Gzip Archive - 10.9 KB -

Archive containing Jupyter notebooks which follow the modeling pipeline to the markov state modeling step and allow to reproduce latent spaces as well as MSMs.

ReadMe.txt

Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Plain Text - 2.4 KB -

Text file describing the folder structure and data

e2e_dists.tar.gz

Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Gzip Archive - 5.1 MB -

Archive containing the timeseries of the end-to-end distance of deca-alanine for each of the harvested trajectories in raw_data

FELs.tar.gz

Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Gzip Archive - 241.1 MB -

Archive containing interactive visualizations of the free energy landscape with its average structures in TICA/EncoderMap space

raw_data.tar.gz

Jun 21, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Gzip Archive - 481.2 MB -

Archive containing the trajectories in xtc format harvested in the respective ensembles (biasing forces of 0-15 kJ/(mol nm))

Add Data

Share Dataverse

Link Dataverse

Reset Modifications