Institute for Theoretical Physics IV

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1 to 10 of 14 Results

Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands' Jun 18, 2024 Speck, Thomas; Siebers, Frank; Bebon, Robin; Jayaram, Ashreya, 2024, "Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'", https://doi.org/10.18419/DARUS-3771, DaRUS, V1 Supporting Brownian dynamics simulation data. It includes the simulated trajectories that were processed to produce the figures in the main text of the accompanying paper. The code that was used to generate this data can be found in the provided Github repository.
BD_trajectories.zip Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands' ZIP Archive - 5.7 GB - MD5: 2a1f0e8f6258c99ed7845e1907230288 Archive containing BD simulation trajectories
README.txt Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands' Plain Text - 1.3 KB - MD5: 53955c280b5b063cd1640e6b7daccfec Instructions on how data is organized
Supplementary material for `Dynamic renormalization of scalar active field theories` Mar 11, 2024 Speck, Thomas; Papanikolaou, Nikos, 2024, "Supplementary material for `Dynamic renormalization of scalar active field theories`", https://doi.org/10.18419/DARUS-4073, DaRUS, V1 The following folders have Jupyter notebook files that are used to obtain the results we present in Section I.1, I.2, III.B, III.C, IV.A and IV.B and Appendix C and D and Figures 9, 10, 11, 13. To calculate the graphical corrections we extensively use the Python package ``restflow'' (https://github.com/us-itp4/restflow). Each folder has one subfold...
analysis.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 222.5 KB - MD5: 7b0deec17a46b036bd248e05dd4943d9 A folder which is used for the analysis of the Active Model B+ and the Model B with the extra cubic term.
simulations.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 336.5 MB - MD5: 4ff3c921aa8256d048b99627ec2e4e77 A folder which is used for the flow equations of the modified cKPZ and for the numerical simulations of the stochastic partial differential equation using py-pde.
tutorials.tar Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories` TAR Archive - 265.5 KB - MD5: 22587259898d336dcdaec655f0f4b40c A folder which introduces how to use the package ``restflow''.
Supplementary material for 'Towards a structural identification of metastable molecular conformations' Aug 9, 2023 Speck, Thomas; Lemcke, Simon; Wand, Michael; Appeldorn, Jörn H., 2023, "Supplementary material for 'Towards a structural identification of metastable molecular conformations'", https://doi.org/10.18419/DARUS-3333, DaRUS, V2 This dataset contains simulation input files for GROMACS (topologies, index, simulation parameters, starting frames, run script) to be able to reproduce the data in the mentioned publication. The generated simulation trajectories are given and some processed data: The end-to-end distances for the produced trajectories which are needed for the calcu...
MSMs.tar.gz Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Gzip Archive - 10.9 KB - MD5: 6750c8586d9f50f98a8a6dba9a566a78 Archive containing Jupyter notebooks which follow the modeling pipeline to the markov state modeling step and allow to reproduce latent spaces as well as MSMs.
ReadMe.txt Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations' Plain Text - 2.4 KB - MD5: df8fbd6c71eac443271c629757f89981 Text file describing the folder structure and data

Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'

Jun 18, 2024

Speck, Thomas; Siebers, Frank; Bebon, Robin; Jayaram, Ashreya, 2024, "Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'", https://doi.org/10.18419/DARUS-3771, DaRUS, V1

Supporting Brownian dynamics simulation data. It includes the simulated trajectories that were processed to produce the figures in the main text of the accompanying paper. The code that was used to generate this data can be found in the provided Github repository.

BD_trajectories.zip

Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'

ZIP Archive - 5.7 GB -

Archive containing BD simulation trajectories

README.txt

Jun 18, 2024 - Supporting data for 'Collective Hall current in chiral active fluids: Coupling of phase and mass transport through traveling bands'

Plain Text - 1.3 KB -

Instructions on how data is organized

Supplementary material for `Dynamic renormalization of scalar active field theories`

Mar 11, 2024

Speck, Thomas; Papanikolaou, Nikos, 2024, "Supplementary material for `Dynamic renormalization of scalar active field theories`", https://doi.org/10.18419/DARUS-4073, DaRUS, V1

The following folders have Jupyter notebook files that are used to obtain the results we present in Section I.1, I.2, III.B, III.C, IV.A and IV.B and Appendix C and D and Figures 9, 10, 11, 13. To calculate the graphical corrections we extensively use the Python package ``restflow'' (https://github.com/us-itp4/restflow). Each folder has one subfold...

analysis.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 222.5 KB -

A folder which is used for the analysis of the Active Model B+ and the Model B with the extra cubic term.

simulations.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 336.5 MB -

A folder which is used for the flow equations of the modified cKPZ and for the numerical simulations of the stochastic partial differential equation using py-pde.

tutorials.tar

Mar 11, 2024 - Supplementary material for `Dynamic renormalization of scalar active field theories`

TAR Archive - 265.5 KB -

A folder which introduces how to use the package ``restflow''.

Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Aug 9, 2023

Speck, Thomas; Lemcke, Simon; Wand, Michael; Appeldorn, Jörn H., 2023, "Supplementary material for 'Towards a structural identification of metastable molecular conformations'", https://doi.org/10.18419/DARUS-3333, DaRUS, V2

This dataset contains simulation input files for GROMACS (topologies, index, simulation parameters, starting frames, run script) to be able to reproduce the data in the mentioned publication. The generated simulation trajectories are given and some processed data: The end-to-end distances for the produced trajectories which are needed for the calcu...

MSMs.tar.gz

Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Gzip Archive - 10.9 KB -

Archive containing Jupyter notebooks which follow the modeling pipeline to the markov state modeling step and allow to reproduce latent spaces as well as MSMs.

ReadMe.txt

Aug 9, 2023 - Supplementary material for 'Towards a structural identification of metastable molecular conformations'

Plain Text - 2.4 KB -

Text file describing the folder structure and data

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