Supporting information and data for the PAZy database on plastics-active enzymes.
Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Advanced Search

1 to 9 of 9 Results
Dec 1, 2021
Buchholz, Patrick C. F., 2021, "GraphML files for sequence networks of PETases and PURases", https://doi.org/10.18419/darus-2054, DaRUS, V1
The GraphML files contain the sequence networks and annotated metadata for protein sequences.
GraphML Network Data - 5.8 MB - MD5: abddf6c05feb40d68c3c5cbed3f21d2b
Protein sequence network for PETase homologues. Edges were selected at a threshold of 55% pairwise sequence identity.
GraphML Network Data - 557.2 KB - MD5: 7cd626f025e5d7a0a253281649894b7f
Protein sequence network for PURase homologues from LED superfamily 11. Edges were selected at a threshold of 60% pairwise sequence identity.
GraphML Network Data - 16.2 KB - MD5: e93342540254b2c25b2826343947b22b
Protein sequence network for PURase homologues from LED superfamily 13. Edges were selected at a threshold of 60% pairwise sequence identity.
Dec 1, 2021
Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]
Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...
Unknown - 7.2 KB - MD5: e81a1a25f3e79e189a048e1a04756cbc
Multiple sequence alignment in Clustal format.
Unknown - 122.2 KB - MD5: 7fa623dde96d25f2919f75b497b2f657
Profile hidden Markov model in HMMER3 format
Unknown - 6.1 KB - MD5: 7e6f4be4289d0fb3371ac4e777be14e9
Multiple sequence alignment in Stockholm format with reference columns: The trimmed alignment region is marked by an 'x' in lines starting with #=GC RF
Tabular Data - 255 B - 3 Variables, 12 Observations - UNF:6:AEjnqfOrnimO5Q2xFDkQDw==
Uniprot identifiers, PDB identifiers, and PDB chains used for the structure-guided multiple sequence alignment by T-COFFEE
Add Data

Log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.