Department of Biochemistry

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11 to 20 of 727 Results

NSD2_ssK36_end_structure.pdb Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate application/vnd.palm - 158.2 KB - MD5: 879b7575f25bdcd2167f9531095ec792 PDB file of exemplary conformation of NSD2 complexed with the 15 amino acid long ssK36 peptide after 100 ns MD simulation.
NSD2_ssK36_P30G_P43S.pdb Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate application/vnd.palm - 153.2 KB - MD5: d0f0501cc7a933f1d5670eac7095997f PDB file of NSD2 complexed with ssK36 P30G/P43S mutant peptide
NSD2_ssK36.pdb Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate application/vnd.palm - 153.6 KB - MD5: 48c1db9240b01ef045647b56e91189a2 PDB file for NSD2 complexed with the 15 amino acid long H3K36 peptide
NSD2_ZNB.pdb Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate application/vnd.palm - 1.5 KB - MD5: 478a9cc6b6c5de185f5233eddb52af50 PDB file of zinc ions
Production_NSD2.py Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate Python Source Code - 14.0 KB - MD5: a85710c28cad53b4962b1328c7abeca8 Python script for the production of MD simulations of NSD2 complexed with a peptide
README.pdf Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate Adobe PDF - 219.1 KB - MD5: 79a268987e3349fbfb79646b503113ea README file to guide you through this repository and explain all contents.
SAM.xml Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate XML - 20.9 KB - MD5: 8504b192cebc39de3edb5595d94cd0e4 Parameter file for cofactor SAM
ZNB.xml Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate XML - 1.6 KB - MD5: a8f183de30b9a05bd6a6515d639ea88c Parameter file for zinc ions
NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons Mar 4, 2024 - Amplicon based bisulfite NGS data Jeltsch, Albert; Bashtrykov, Pavel; Dossmann, Leonie; Emperle, Max, 2024, "NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons", https://doi.org/10.18419/darus-3386, DaRUS, V1 Cloning and site-directed mutagenesis The gene of the catalytic, C-terminal domain of murine DNMT3C (amino acid residues 439-740 of P0DOY1) was obtained in E. coli codon optimized form from IDT Integrated DNA Technologies. The gene fragment was cloned with the StrataClone PCR Clo...
Compilation of data sets.pdf Mar 4, 2024 - NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons Adobe PDF - 112.4 KB - MD5: dbab3ec3d9e016b3deae005d76cc8f78

NSD2_ssK36_end_structure.pdb

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

application/vnd.palm - 158.2 KB -

PDB file of exemplary conformation of NSD2 complexed with the 15 amino acid long ssK36 peptide after 100 ns MD simulation.

NSD2_ssK36_P30G_P43S.pdb

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

application/vnd.palm - 153.2 KB -

PDB file of NSD2 complexed with ssK36 P30G/P43S mutant peptide

NSD2_ssK36.pdb

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

application/vnd.palm - 153.6 KB -

PDB file for NSD2 complexed with the 15 amino acid long H3K36 peptide

NSD2_ZNB.pdb

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

application/vnd.palm - 1.5 KB -

PDB file of zinc ions

Production_NSD2.py

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

Python Source Code - 14.0 KB -

Python script for the production of MD simulations of NSD2 complexed with a peptide

README.pdf

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

Adobe PDF - 219.1 KB -

README file to guide you through this repository and explain all contents.

SAM.xml

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

XML - 20.9 KB -

Parameter file for cofactor SAM

ZNB.xml

Mar 28, 2024 - Additional data related to Weirich et al.: Discovery of new NSD2 non-histone substrates and design of a super-substrate

XML - 1.6 KB -

Parameter file for zinc ions

NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons

Mar 4, 2024 - Amplicon based bisulfite NGS data

Jeltsch, Albert; Bashtrykov, Pavel; Dossmann, Leonie; Emperle, Max, 2024, "NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons", https://doi.org/10.18419/darus-3386, DaRUS, V1

Cloning and site-directed mutagenesis The gene of the catalytic, C-terminal domain of murine DNMT3C (amino acid residues 439-740 of P0DOY1) was obtained in E. coli codon optimized form from IDT Integrated DNA Technologies. The gene fragment was cloned with the StrataClone PCR Clo...

Compilation of data sets.pdf

Mar 4, 2024 - NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons

Adobe PDF - 112.4 KB -

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