1 to 10 of 33 Results
Jun 16, 2020 -
Expansin domains in CBM63 sequences
Tabular Data - 8.4 KB - 1 Variables, 567 Observations - UNF:6:i7aLIL6weIF8nhTjUBKf+g==
Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20. |
Unknown - 110.9 KB -
MD5: 9c4c77ebc1b7f7a3c4c4f9bf713aa7fe
Profile hidden Markov model in HMMER format for the chitinase superfamily |
Unknown - 81.4 KB -
MD5: 61d6a4adfde821f447d18458a00e7667
Profile hidden Markov model in HMMER format for the endolysin superfamily |
Unknown - 15.9 KB -
MD5: 1de23a931f1988e2e26fa21ca210605c
Clustal alignment for the profile hidden Markov model of the chitinase superfamily
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Unknown - 18.2 KB -
MD5: 116056d1f562c17e3a2b0ebe8714d0fe
Stockholm alignment for the profile hidden Markov model of the chitinase superfamily |
Unknown - 394.5 KB -
MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily |
Unknown - 419.3 KB -
MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily |
Unknown - 20.3 KB -
MD5: 1961bf93199d823fa0fb953e5e120100
FASTA headers comprise (from left to right): number of the seed sequence; sequence identifier (sid) in the GH19ED database; protein identifier (pid) in the GH19ED database; Uniprot or NCBI accession. |
GraphML Network Data - 14.3 MB -
MD5: a314980fa659092d23cfda60fb45929a
Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database.
The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch... |
GraphML Network Data - 5.6 MB -
MD5: f255b9e12d219a65533643ae3b529282
Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database.
The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch... |