1 to 10 of 28 Results
Jan 30, 2020 -
Query sequences for the update of the ExED
Tabular Data - 505 B - 1 Variables, 25 Observations - UNF:6:eFcDsa8udm3F11lB7M2q6w==
Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED. |
Jan 30, 2020 -
Query sequences for the update of the ExED
Unknown - 6.5 KB -
MD5: 5ae0036abf33f3585e5629a8337b7039
Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database. |
Jan 30, 2020 -
Query sequences for the update of the ExED
Unknown - 8.7 KB -
MD5: 4f5de838715758c51a8cf33de96da0e8
Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB. |
Apr 9, 2020 -
Occurrence of expansins in the tree of life
Tabular Data - 4.0 KB - 6 Variables, 90 Observations - UNF:6:eK0oQia4QiaiEO0m1BJFeA==
Tabular comparison between the occurrences of expansins in different taxa as reported in the Expansin Engineering Database (ExED) and Chase et al. (2020):
Name of the taxonomic superkingdom;
Name of the (major) taxonomic group reported in Chase et al. 2020;
Lineage contains ex... |
GraphML Network Data - 85.9 MB -
MD5: 6b7c3ee5702bf65837900503ef335e54
Protein sequence network for N-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database, for sequences with length between 210 and 300 residues.The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ U... |
GraphML Network Data - 20.8 MB -
MD5: 1bcf30f501153632979c2e032fe5a497
Protein sequence network for C-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence iden... |
Jan 30, 2020
Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]
Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/). |
Jan 30, 2020
Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED", https://doi.org/10.18419/darus-623, DaRUS, V1
Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins. |
Apr 9, 2020
Lohoff, Caroline, 2020, "Occurrence of expansins in the tree of life", https://doi.org/10.18419/darus-693, DaRUS, V1, UNF:6:eK0oQia4QiaiEO0m1BJFeA== [fileUNF]
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. |
GraphML Network Data - 25.2 MB -
MD5: dd85b921f70e99ae9cbffc2156be55c0
Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database.
The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pa... |