Expansin Engineering Database

Supporting information and original files for bioinformatic investigations using the Expansin Engineering Database (https://exed.biocatnet.de/)

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21 to 28 of 28 Results

Expansins_CterminalDomain_2.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 3.4 KB - MD5: 63ce826a9b671db8c19d19e59f7fa67f Stockholm alignment for the C-terminal expansin domain
Expansins_NterminalDomain_9.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.6 KB - MD5: 010dfcb74e481bcc072eb4bef298b5d8 Clustal alignment for the N-terminal expansin domain
Expansins_NterminalDomain_9.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 50.5 KB - MD5: 84663760c0d987f0b92761ca71a83d6a Profile hidden Markov model in HMMER format for the N-terminal expansin domain
Expansins_NterminalDomain_9.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.8 KB - MD5: c82120b740d3867bc4b11a2fe5def375 Stockholm alignment for the N-terminal expansin domain
Query sequences for the update of the ExED Jan 30, 2020 Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF] Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).
Update_1_Seed_sequences_Hfams_1-25.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 8.7 KB - MD5: 4f5de838715758c51a8cf33de96da0e8 Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.
Update_2_Centroids_USEARCH.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 6.5 KB - MD5: 5ae0036abf33f3585e5629a8337b7039 Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.
Update_2_Centroids_USEARCH.tab Jan 30, 2020 - Query sequences for the update of the ExED Tabular Data - 505 B - 1 Variables, 25 Observations - UNF:6:eFcDsa8udm3F11lB7M2q6w== Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.

Expansins_CterminalDomain_2.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 3.4 KB -

Stockholm alignment for the C-terminal expansin domain

Expansins_NterminalDomain_9.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.6 KB -

Clustal alignment for the N-terminal expansin domain

Expansins_NterminalDomain_9.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 50.5 KB -

Profile hidden Markov model in HMMER format for the N-terminal expansin domain

Expansins_NterminalDomain_9.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.8 KB -

Stockholm alignment for the N-terminal expansin domain

Query sequences for the update of the ExED

Jan 30, 2020

Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]

Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).

Update_1_Seed_sequences_Hfams_1-25.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 8.7 KB -

Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.

Update_2_Centroids_USEARCH.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 6.5 KB -

Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.

Update_2_Centroids_USEARCH.tab

Jan 30, 2020 - Query sequences for the update of the ExED

Tabular Data - 505 B - 1 Variables, 25 Observations -

Tabular file with headers: sequence identifier from the Expansin Engineering Database (1st column) and NCBI accession.version (2nd column). This file lists the sequence accessions used in the first update of the ExED.

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