Expansin Engineering Database

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File Type: Unknown

1 to 10 of 10 Results

hits_aa.fasta Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa Unknown - 1.3 KB - MD5: 00f8e0957e042214a2c935343fae28f9 FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
hits_nt.fasta Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa Unknown - 4.0 KB - MD5: 7dbd7e182fdf07bf4bd300fbd68ed0a4 FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.
Expansins_CterminalDomain_2.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 2.8 KB - MD5: 4fac8317bd493c0e87d9a2014528f6e8 Clustal alignment for the C-terminal expansin domain
Expansins_CterminalDomain_2.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 37.8 KB - MD5: bff77f04191cafcd2319527717ff504a Profile hidden Markov model in HMMER format for the C-terminal expansin domain
Expansins_CterminalDomain_2.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 3.4 KB - MD5: 63ce826a9b671db8c19d19e59f7fa67f Stockholm alignment for the C-terminal expansin domain
Expansins_NterminalDomain_9.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.6 KB - MD5: 010dfcb74e481bcc072eb4bef298b5d8 Clustal alignment for the N-terminal expansin domain
Expansins_NterminalDomain_9.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 50.5 KB - MD5: 84663760c0d987f0b92761ca71a83d6a Profile hidden Markov model in HMMER format for the N-terminal expansin domain
Expansins_NterminalDomain_9.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.8 KB - MD5: c82120b740d3867bc4b11a2fe5def375 Stockholm alignment for the N-terminal expansin domain
Update_1_Seed_sequences_Hfams_1-25.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 8.7 KB - MD5: 4f5de838715758c51a8cf33de96da0e8 Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.
Update_2_Centroids_USEARCH.fasta Jan 30, 2020 - Query sequences for the update of the ExED Unknown - 6.5 KB - MD5: 5ae0036abf33f3585e5629a8337b7039 Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.

hits_aa.fasta

Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa

Unknown - 1.3 KB -

FASTA file of protein sequences (amino acid symbols). The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.

hits_nt.fasta

Apr 9, 2020 - Expansin homologues in actinobacterial genomes from South Africa

Unknown - 4.0 KB -

FASTA file of nucleic acid sequences. The numbers in the headers correspond to the hits mentioned in the Supporting Information file from Lohoff et al. 2020.

Expansins_CterminalDomain_2.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 2.8 KB -

Clustal alignment for the C-terminal expansin domain

Expansins_CterminalDomain_2.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 37.8 KB -

Profile hidden Markov model in HMMER format for the C-terminal expansin domain

Expansins_CterminalDomain_2.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 3.4 KB -

Stockholm alignment for the C-terminal expansin domain

Expansins_NterminalDomain_9.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.6 KB -

Clustal alignment for the N-terminal expansin domain

Expansins_NterminalDomain_9.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 50.5 KB -

Profile hidden Markov model in HMMER format for the N-terminal expansin domain

Expansins_NterminalDomain_9.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.8 KB -

Stockholm alignment for the N-terminal expansin domain

Update_1_Seed_sequences_Hfams_1-25.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 8.7 KB -

Seed (query) sequences for the initial setup of the ExED. Protein sequences are given in FASTA format. Headers correspond to sequence identifiers in the style of UniprotKB.

Update_2_Centroids_USEARCH.fasta

Jan 30, 2020 - Query sequences for the update of the ExED

Unknown - 6.5 KB -

Seed (query) sequences for the first update of the ExED (USEARCH centroid sequences). Protein sequences are given in FASTA format with one line per sequence. Headers correspond to sequence identifiers of the Expansin Engineering Database.

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