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Publication Year: 2020 File Type: Network Data

1 to 8 of 8 Results

CHITs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 14.3 MB - MD5: a314980fa659092d23cfda60fb45929a Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...
ELYSs_60_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 5.6 MB - MD5: f255b9e12d219a65533643ae3b529282 Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...
GH19_40_percent_identity_cutoff.graphml Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues GraphML Network Data - 72.1 MB - MD5: 1ef54be08ab8b4dbe1f5b4a0407fac75 Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque...
CBM63_Sfams123_210-300_90_50.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 70.6 MB - MD5: 51c315706ee9f262b816ee2654172d0e Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...
GH45_Sfam_1234_Ndomain_90_30.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 178.7 MB - MD5: afaa6dd751225c3dfb4a7702ad979993 Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...
Ndomains_1234_CBM_09_60identity.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 25.2 MB - MD5: dd85b921f70e99ae9cbffc2156be55c0 Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pa...
Sfam_123_Cdomain_90_60.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 20.8 MB - MD5: 1bcf30f501153632979c2e032fe5a497 Protein sequence network for C-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence iden...
Sfams_123_210-300_90_50.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 85.9 MB - MD5: 6b7c3ee5702bf65837900503ef335e54 Protein sequence network for N-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database, for sequences with length between 210 and 300 residues.The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ U...

CHITs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 14.3 MB -

Protein sequence network for the chitinase domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...

ELYSs_60_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 5.6 MB -

Protein sequence network for the endolysin domains from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch...

GH19_40_percent_identity_cutoff.graphml

Jun 1, 2020 - GraphML files for protein sequence networks of glycoside hydrolase 19 homologues

GraphML Network Data - 72.1 MB -

Protein sequence network for representative GH19 domains (corresponding to Pfam’s GH19 profile HMM: PF00182) from the Glycoside Hydrolase 19 Engineering Database. The GraphML file contains representative nodes (clustered by 90% in USEARCH) connected by at least 40% pairwise seque...

CBM63_Sfams123_210-300_90_50.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 70.6 MB -

Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...

GH45_Sfam_1234_Ndomain_90_30.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 178.7 MB -

Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...

Ndomains_1234_CBM_09_60identity.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 25.2 MB -

Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pa...

Sfam_123_Cdomain_90_60.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 20.8 MB -

Protein sequence network for C-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence iden...

Sfams_123_210-300_90_50.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 85.9 MB -

Protein sequence network for N-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database, for sequences with length between 210 and 300 residues.The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ U...

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