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1 to 10 of 77 Results

The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Sep 30, 2019 Bauer, Tabea, 2019, "The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins", https://doi.org/10.18419/darus-458, DaRUS, V1, UNF:6:pbQRgDXU4w7vnxyqxzzuRQ== [fileUNF] To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase superfamilies 8 to 12 were selected from the Lipase Engineering Database (https://led.biocatnet.de/). Th...
APAP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 11.9 KB - 9 Variables, 173 Observations - UNF:6:UT/tuDCkMGlPeUykEk1hsw== APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv
DPPIV.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 7.0 KB - 9 Variables, 103 Observations - UNF:6:ZKUns1L0wMyZIEclSuHQVQ== DPPIV (human dipeptidyl peptidase IV) spreadsheet of Supplements01-1.xlsx as csv
HEP.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 10.0 KB - 9 Variables, 154 Observations - UNF:6:bAQkev4V9Lkkkj8oTELKlg== HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv
HPL.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 601 B - 9 Variables, 10 Observations - UNF:6:/rbtvGkBUcWV/wLnakHqRg== HPL (human pancreatic lipase) spreadsheet of Supplements01-1.xlsx as csv
PSML.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.1 KB - 9 Variables, 35 Observations - UNF:6:XqW8mARoKShCASUYwLo1pA== PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv
RCE.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.5 KB - 9 Variables, 41 Observations - UNF:6:bklMJ1HASVPCxiIVaP7wyQ== RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv
Supplements01-1.xlsx Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins MS Excel Spreadsheet - 49.3 KB - MD5: 16212d43120787f58882868243783bbf This file contains the data of the Dali analysis with the additional N- and C-terminal module of the indicated proteins. Column A-H show the result from the Dali analysis. All found structures were additionally analyzed by PyMOL to determine whether they belong to the α/β-hydrola...
Query sequences for the update of the LccED Jan 27, 2020 Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF] Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).
seeds_accession.tab Jan 27, 2020 - Query sequences for the update of the LccED Tabular Data - 25.8 KB - 1 Variables, 1260 Observations - UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).

The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Sep 30, 2019

Bauer, Tabea, 2019, "The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins", https://doi.org/10.18419/darus-458, DaRUS, V1, UNF:6:pbQRgDXU4w7vnxyqxzzuRQ== [fileUNF]

To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase superfamilies 8 to 12 were selected from the Lipase Engineering Database (https://led.biocatnet.de/). Th...

APAP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 11.9 KB - 9 Variables, 173 Observations -

APAP (acylaminoacyl peptidase from Aeropyrum pernix K1) spreadsheet of Supplements01-1.xlsx as csv

DPPIV.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 7.0 KB - 9 Variables, 103 Observations -

DPPIV (human dipeptidyl peptidase IV) spreadsheet of Supplements01-1.xlsx as csv

HEP.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 10.0 KB - 9 Variables, 154 Observations -

HEP (human epoxide hydrolase) spreadsheet of Supplements01-1.xlsx as csv

HPL.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 601 B - 9 Variables, 10 Observations -

HPL (human pancreatic lipase) spreadsheet of Supplements01-1.xlsx as csv

PSML.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.1 KB - 9 Variables, 35 Observations -

PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv

RCE.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.5 KB - 9 Variables, 41 Observations -

RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv

Supplements01-1.xlsx

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

MS Excel Spreadsheet - 49.3 KB -

This file contains the data of the Dali analysis with the additional N- and C-terminal module of the indicated proteins. Column A-H show the result from the Dali analysis. All found structures were additionally analyzed by PyMOL to determine whether they belong to the α/β-hydrola...

Query sequences for the update of the LccED

Jan 27, 2020

Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF]

Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).

seeds_accession.tab

Jan 27, 2020 - Query sequences for the update of the LccED

Tabular Data - 25.8 KB - 1 Variables, 1260 Observations -

Tabular file with headers: sequence identifier from the Laccase and Multicopper Oxidase Engineering Database (1st column) and NCBI accession.version (2nd column).

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