1 to 10 of 46 Results
Jun 16, 2020 - Expansin Engineering Database
Lohoff, Caroline, 2020, "Expansin domains in CBM63 sequences", https://doi.org/10.18419/darus-625, DaRUS, V2, UNF:6:p+wfgXpfeyT0/kJm49wLTA== [fileUNF]
The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were annotated with the hmmscan command from the HMMER software package. The hits were filtered by a minimal doma... |
Jun 16, 2020 -
Expansin domains in CBM63 sequences
Tabular Data - 8.4 KB - 1 Variables, 567 Observations - UNF:6:i7aLIL6weIF8nhTjUBKf+g==
Tabular file with headers: CBM63 with both domains (1st column), CBM63 with N-terminal domain (2nd column), CBM63 with C-terminal domain (3rd column). The expansin domains were annotated using a minimal domain-based score of 20. |
Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database
Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1
A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s... |
Unknown - 110.9 KB -
MD5: 9c4c77ebc1b7f7a3c4c4f9bf713aa7fe
Profile hidden Markov model in HMMER format for the chitinase superfamily |
Unknown - 81.4 KB -
MD5: 61d6a4adfde821f447d18458a00e7667
Profile hidden Markov model in HMMER format for the endolysin superfamily |
Unknown - 15.9 KB -
MD5: 1de23a931f1988e2e26fa21ca210605c
Clustal alignment for the profile hidden Markov model of the chitinase superfamily
|
Unknown - 18.2 KB -
MD5: 116056d1f562c17e3a2b0ebe8714d0fe
Stockholm alignment for the profile hidden Markov model of the chitinase superfamily |
Unknown - 394.5 KB -
MD5: b30ebdc0bf4ad0af8b50c15f6339b5e7
Clustal alignment for the profile hidden Markov model of the endolysin superfamily |
Unknown - 419.3 KB -
MD5: 88e1f79860f29df5626599bd48cfcff3
Stockholm alignment for the profile hidden Markov model of the endolysin superfamily |
Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database
Orlando, Marco, 2020, "Seed sequences for the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-804, DaRUS, V1
Query sequences for the individual BLAST searches used to initialize the Glycoside Hydrolase 19 Engineering Database (GH19ED, https://gh19ed.biocatnet.de/). |