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21 to 30 of 77 Results

RCE.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.5 KB - 9 Variables, 41 Observations - UNF:6:bklMJ1HASVPCxiIVaP7wyQ== RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv
Query sequences for the update of the LccED Jan 27, 2020 Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF] Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).
Query sequences for the update of the ExED Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF] Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).
PSML.tab Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins Tabular Data - 2.1 KB - 9 Variables, 35 Observations - UNF:6:XqW8mARoKShCASUYwLo1pA== PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv
Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors May 3, 2021 Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/darus-1801, DaRUS, V1 Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.
Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1 A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s...
Profile hidden Markov models of the ExED Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED", https://doi.org/10.18419/darus-623, DaRUS, V1 Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins.
Profile hidden Markov model for PETase homologues Dec 1, 2021 - PAZy Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF] Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...
PMH.hmm May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 232.1 KB - MD5: a570ab6b46dedfc2dffaea46aa542445 Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln
PMH.aln May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases Unknown - 61.7 KB - MD5: 68593cdf74879917c223c38d1a5de53d Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases

RCE.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.5 KB - 9 Variables, 41 Observations -

RCE (Rhodococcus sp. MB1 cocaine esterase) spreadsheet of Supplements01-1.xlsx as csv

Query sequences for the update of the LccED

Jan 27, 2020

Zeil, Catharina; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the LccED", https://doi.org/10.18419/darus-559, DaRUS, V1, UNF:6:hIeqwMgxpY0QZZZ4FAMRvg== [fileUNF]

Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/).

Query sequences for the update of the ExED

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline; Buchholz, Patrick C. F., 2020, "Query sequences for the update of the ExED", https://doi.org/10.18419/darus-622, DaRUS, V1, UNF:6:eFcDsa8udm3F11lB7M2q6w== [fileUNF]

Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/).

PSML.tab

Sep 30, 2019 - The modular structure of alpha/beta-hydrolases: similarity of the N- and C-terminal domains to other proteins

Tabular Data - 2.1 KB - 9 Variables, 35 Observations -

PSML (Pseudomonas sp. MIS38 lipase) spreadsheet of Supplements01-1.xlsx as csv

Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors

May 3, 2021

Heberlein, Magdalena, 2021, "Protein sequences of arylsulfatases, phosphonate monoester hydrolases, and reconstructed ancestors", https://doi.org/10.18419/darus-1801, DaRUS, V1

Protein sequences were derived from a maximum-likelihood phylogenetic tree for arylsulfatases and phosphonate monoester hydrolases, including a selection of reconstructed ancestral sequences.

Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database

Jun 1, 2020 - Glycoside Hydrolase 19 Engineering Database

Orlando, Marco, 2020, "Profile hidden Markov models of the Glycoside Hydrolase 19 Engineering Database", https://doi.org/10.18419/darus-803, DaRUS, V1

A starting alignment was built if other sequences with a known PDB structure were available, by performing a GH19 domain structure-based alignment generated through the mmaker command implemented in ChimeraX. Other seed sequences in the same superfamily were added to this fixed s...

Profile hidden Markov models of the ExED

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline, 2020, "Profile hidden Markov models of the ExED", https://doi.org/10.18419/darus-623, DaRUS, V1

Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins.

Profile hidden Markov model for PETase homologues

Dec 1, 2021 - PAZy

Buchholz, Patrick C. F., 2021, "Profile hidden Markov model for PETase homologues", https://doi.org/10.18419/darus-2055, DaRUS, V1, UNF:6:AEjnqfOrnimO5Q2xFDkQDw== [fileUNF]

Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid sequences. These twelve protein sequences were aligned in a structure-guided multiple sequence alignment by T-...

PMH.hmm

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 232.1 KB -

Profile hidden Markov model in HMMER3 format based on the multiple sequence alignment in PMH.aln

PMH.aln

May 12, 2021 - Consensus sequences of arylsulfatases and phosphonate monoester hydrolases

Unknown - 61.7 KB -

Multiple sequence alignment in Clustal format for 85 homologues of phosphonate monoester hydrolases

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