Institute of Biochemistry and Technical Biochemistry

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21 to 30 of 1,227 Results

Expansins_CterminalDomain_2.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 2.8 KB - MD5: 4fac8317bd493c0e87d9a2014528f6e8 Clustal alignment for the C-terminal expansin domain
Expansins_CterminalDomain_2.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 37.8 KB - MD5: bff77f04191cafcd2319527717ff504a Profile hidden Markov model in HMMER format for the C-terminal expansin domain
Expansins_CterminalDomain_2.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 3.4 KB - MD5: 63ce826a9b671db8c19d19e59f7fa67f Stockholm alignment for the C-terminal expansin domain
Expansins_NterminalDomain_9.aln Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.6 KB - MD5: 010dfcb74e481bcc072eb4bef298b5d8 Clustal alignment for the N-terminal expansin domain
Expansins_NterminalDomain_9.hmm Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 50.5 KB - MD5: 84663760c0d987f0b92761ca71a83d6a Profile hidden Markov model in HMMER format for the N-terminal expansin domain
Expansins_NterminalDomain_9.sto Jan 30, 2020 - Profile hidden Markov models of the ExED Unknown - 4.8 KB - MD5: c82120b740d3867bc4b11a2fe5def375 Stockholm alignment for the N-terminal expansin domain
GraphML files for protein sequence networks of expansin homologues Jan 30, 2020 - Expansin Engineering Database Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1 GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr...
CBM63_Sfams123_210-300_90_50.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 70.6 MB - MD5: 51c315706ee9f262b816ee2654172d0e Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...
GH45_Sfam_1234_Ndomain_90_30.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 178.7 MB - MD5: afaa6dd751225c3dfb4a7702ad979993 Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...
Ndomains_1234_CBM_09_60identity.graphml Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues GraphML Network Data - 25.2 MB - MD5: dd85b921f70e99ae9cbffc2156be55c0 Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pa...

Expansins_CterminalDomain_2.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 2.8 KB -

Clustal alignment for the C-terminal expansin domain

Expansins_CterminalDomain_2.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 37.8 KB -

Profile hidden Markov model in HMMER format for the C-terminal expansin domain

Expansins_CterminalDomain_2.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 3.4 KB -

Stockholm alignment for the C-terminal expansin domain

Expansins_NterminalDomain_9.aln

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.6 KB -

Clustal alignment for the N-terminal expansin domain

Expansins_NterminalDomain_9.hmm

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 50.5 KB -

Profile hidden Markov model in HMMER format for the N-terminal expansin domain

Expansins_NterminalDomain_9.sto

Jan 30, 2020 - Profile hidden Markov models of the ExED

Unknown - 4.8 KB -

Stockholm alignment for the N-terminal expansin domain

GraphML files for protein sequence networks of expansin homologues

Jan 30, 2020 - Expansin Engineering Database

Lohoff, Caroline, 2020, "GraphML files for protein sequence networks of expansin homologues", https://doi.org/10.18419/darus-624, DaRUS, V1

GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived fr...

CBM63_Sfams123_210-300_90_50.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 70.6 MB -

Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file co...

GH45_Sfam_1234_Ndomain_90_30.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 178.7 MB -

Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015). The GraphML file contains representative nodes (clustered by 0.9...

Ndomains_1234_CBM_09_60identity.graphml

Jan 30, 2020 - GraphML files for protein sequence networks of expansin homologues

GraphML Network Data - 25.2 MB -

Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pa...

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