EnzymeML

The EnzymeML data repository of the Institute of Biochemistry and Technical Biochemistry.

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131 to 140 of 166 Results

_toc.yml Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics Unknown - 517 B - MD5: e8546ce8f4be83b6fa04c6733d041c61
utility.py Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics Python Source Code - 1.3 KB - MD5: ee96c71d6460536ab2e68b61eb5d6dc0
welcome.md Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics Markdown Text - 543 B - MD5: 579e74658f80a6026afa0ee648e1afe2
workflow_SLAC.png Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics PNG Image - 211.9 KB - MD5: 3b638ccbd43257580ddcf8c7e7cbbf82
writeEnzymeInactivation.py Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics Python Source Code - 2.3 KB - MD5: 6c0c1bd1ca668420a94608ff4b6eb36c
Catalysis of L-cysteine by IscS in the presence of IscU Feb 15, 2022 - EnzymeML at work Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1 Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.
AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 48.9 KB - MD5: f35f461622c4204a4e279458bccd14ce Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.
AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Jupyter Notebook - 55.2 KB - MD5: 12615450c9a703b35f21a3e9af6f2a4f Used to model the given OMEX EnzymeML archive using the Python package lmfit.
Desulfuration_Cysteine_Pinto_input_interferENZY.txt Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Plain Text - 370 B - MD5: 679c41f97de6f72684385e95865cb715 Text file that is used as input for InterferEnzy
Desulfuration_Cysteine_Pinto.omex Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU Unknown - 6.5 KB - MD5: ef8907a79459d27a988be27c5a245a4c OMEX EnzymeML archive that was generated from the data using the given spreadsheet.

_toc.yml

Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics

Unknown - 517 B -

utility.py

Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics

Python Source Code - 1.3 KB -

welcome.md

Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics

Markdown Text - 543 B -

workflow_SLAC.png

Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics

PNG Image - 211.9 KB -

writeEnzymeInactivation.py

Feb 2, 2023 - From raw data to kinetic parameters: an EnzymeML-based workflow for reproducible enzyme kinetics

Python Source Code - 2.3 KB -

Catalysis of L-cysteine by IscS in the presence of IscU

Feb 15, 2022 - EnzymeML at work

Pinto, Maria Filipa, 2022, "Catalysis of L-cysteine by IscS in the presence of IscU", https://doi.org/10.18419/DARUS-2483, DaRUS, V1

Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over the course of 2.5 minutes for alanine. Additionally, the concentration of cysteine over time was calculated from the given values, for the later modelling.

AnalysingInitialRateDataUsingMichaelisMentenKineticsinterferENZY.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 48.9 KB -

Used to generate an InterferEnzy file from an OMEX EnzymeML archive, which was the sent to the modeling platform to estimate the parameters.

AnalysingInitialRateDataUsingMichaelisMentenKineticsJupyterNotebook.ipynb

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Jupyter Notebook - 55.2 KB -

Used to model the given OMEX EnzymeML archive using the Python package lmfit.

Desulfuration_Cysteine_Pinto_input_interferENZY.txt

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Plain Text - 370 B -

Text file that is used as input for InterferEnzy

Desulfuration_Cysteine_Pinto.omex

Feb 15, 2022 - Catalysis of L-cysteine by IscS in the presence of IscU

Unknown - 6.5 KB -

OMEX EnzymeML archive that was generated from the data using the given spreadsheet.

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